Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F01
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 35 0.066
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 35 0.066
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 35 0.066
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 35 0.066
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 35 0.066
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 35 0.066
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 33 0.20
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 33 0.20
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 33 0.20
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.20
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.27
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.27
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 33 0.27
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 32 0.46
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 32 0.61
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 32 0.61
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 31 0.81
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 31 0.81
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 31 1.1
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 31 1.4
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 31 1.4
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 30 2.5
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 30 2.5
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 29 3.3
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 3.3
U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 29 4.3
U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 29 4.3
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 29 4.3
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 29 4.3
AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 29 4.3
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 29 4.3
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 29 4.3
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.7
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 29 5.7
Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 28 7.5
U88315-5|ABO16438.1| 355|Caenorhabditis elegans Hypothetical pr... 28 7.5
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 28 7.5
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z83104-2|CAB54203.1| 563|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 10.0
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 28 10.0
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 10.0
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 10.0
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 28 10.0
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 293
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 293
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 293
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 293
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 293
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 123 MIDSLLATYDRDSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWN 293
+ + LL+ ++ ++PPD + V L L H I E + T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWD 127
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 147 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
YD D+P + L +L+ + E E V + +L W D RLSWN
Sbjct: 65 YDPDAPQRYNYTLFL-YNLKLIQVNEPEEQVSVVLELMEYWYDPRLSWN 112
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 180 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 33.5 bits (73), Expect = 0.20
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 180 VVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +3
Query: 123 MIDSLLATYDRDSPP--DSK--IVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 287
+I+ L++ Y R+ P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 288 W 290
W
Sbjct: 85 W 85
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 123 MIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 287
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 288 WN 293
W+
Sbjct: 90 WD 91
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 123 MIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 287
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 288 WN 293
W+
Sbjct: 90 WD 91
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 123 MIDSLLATYDR----DSPPDSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 287
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 288 WN 293
W+
Sbjct: 90 WD 91
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 147 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
YD ++P + L +L+ ++E + + + ++ W D RLSWN
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWN 111
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 189 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
L +L+ ++E E V + +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWN 113
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 SSERLWRPDVVLLNAAATT-AGDYALRARVSXNGSV 432
+S +LWRPDV+L N+ + + Y+ R VS NG V
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSXNGSVSW 438
V S+ +W PDVVL N A G+Y + +A+++ NG+V W
Sbjct: 103 VPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSXNGSVSW 438
V S+ +W PDVVL N A G+Y + +A+++ NG+V W
Sbjct: 103 VPSDTIWLPDVVLYNNA---DGNYQVTIMTKAKLTYNGTVEW 141
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 331 SERLWRPDVVLLNAAATTAGDYA---LRARVSXNGSVSWIK-RLDISXPISMQLDKWAND 498
SERLW P+V +N+ +T + + NG+V W+ R+ +S P S +L ++ D
Sbjct: 112 SERLWTPNVCFVNSKSTQVHKSPASNILLIIYPNGTV-WLNYRVQVSAPCSFELSRFPID 170
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 301 EWGCSSWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSXNGSVSWI 441
E+G S L V S+R+W PD+VL NA + V +G V+W+
Sbjct: 128 EYGNISNLHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWV 176
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 301 EWGCSSWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSXNGSVSWI 441
E+G S L V S+R+W PD+VL NA + V +G V+W+
Sbjct: 128 EYGNISNLHVPSDRVWLPDIVLFNNADGNYEVSFKSNVFVDHHGDVTWV 176
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 99 ENATSLS-LMIDSLLATYDRDSPPDSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWI 272
E+A L+ L I +A+ + + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 273 DKRLSWN 293
D RL WN
Sbjct: 93 DDRLMWN 99
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +3
Query: 96 CENATSL----SLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHA-NIRESESTVRIQAD 254
CEN +L S +++ + YDR P ++VN+T+ L ++E++
Sbjct: 60 CENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAYVIS 119
Query: 255 LQMNWIDKRLSWN 293
W D RLSW+
Sbjct: 120 HTQRWYDGRLSWD 132
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 162 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
PP +I + L++ ++ + E E D + +W D RLSW+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWD 121
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 189 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
L +L+ ++E V + +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 147 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
YD D+P + L L+ + E V + ++ W D RLSWN
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWN 111
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 328 SSERLWRPDVVLLNAAATT-AGDYALRARVSXNGSVSWI 441
SS+ +W+PDV+L N+AA + G+V WI
Sbjct: 105 SSDHIWKPDVLLYNSAAEDFDSTFKSNLLTYHTGTVVWI 143
>U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform a protein.
Length = 446
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYALR--ARVSXNGSVSWIKRLDISXPISMQLDKWAND 498
V SE +W+PD+++ N A + ++ ++ G +S + + +Q++K+ D
Sbjct: 101 VPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFPYD 160
>U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine
receptor protein17, isoform b protein.
Length = 515
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYALR--ARVSXNGSVSWIKRLDISXPISMQLDKWAND 498
V SE +W+PD+++ N A + ++ ++ G +S + + +Q++K+ D
Sbjct: 101 VPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFPYD 160
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 337 RLWRPDVVLLNAAATT--AGDYALRARVSXNGSVSWI 441
R+W+PD++L+N A A + V+ +G+V+W+
Sbjct: 193 RIWKPDIILVNNAIREYYASLVSTDVMVTSDGNVTWL 229
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 222 ESESTVRIQADLQMNWIDKRLSWN 293
E + ++ L +NW+D RLSWN
Sbjct: 154 ERNQALTTRSWLNINWMDPRLSWN 177
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 93 ECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRE-SESTVRIQADLQMN- 266
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 267 -WIDKRLSW 290
W D RLS+
Sbjct: 68 IWQDPRLSF 76
>AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine
receptor, nicotinic,alpha 9 like (58.1 kD) alternative
variant a protein.
Length = 499
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYALR--ARVSXNGSVSWIKRLDISXPISMQLDKWAND 498
V SE +W+PD+++ N A + ++ ++ G +S + + +Q++K+ D
Sbjct: 85 VPSEMIWKPDLLVYNNANMNIKENEMQTNVQIEHTGKISLFRAIITDITCDLQMEKFPYD 144
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 162 PPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
PP +++ + + + L+ ++ E E V D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + + ++ L +W+D RLSWN
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWN 70
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 114 LSLMIDSLLATYDRDSPP----DSKIVVNLTLHL-RHANIRESESTVRIQADLQMNWIDK 278
+S ++++LL Y++ P + V +L R ++ E + L+M W DK
Sbjct: 29 VSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Query: 279 RLSWN 293
+L+WN
Sbjct: 89 KLTWN 93
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 301 EWGCSSWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSXNGSVSW 438
+WG ++ + S+++W PD+VL NA A++ +G V W
Sbjct: 96 DWGGVEYIHIPSDQIWIPDIVLYNNADGEPHITITSLAKIDHHGRVVW 143
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 195 LHLRHAN-IRESESTVRIQADLQMNWIDKRLSWN 293
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 337 RLWRPDVVLLNAAATTAGD-YALRARVSXNGSVSWI 441
+LW PDV++ N+A YA V NG V+W+
Sbjct: 106 QLWTPDVLMYNSADPQFDSRYASNLLVYPNGLVNWM 141
>Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical
protein C11H1.4b protein.
Length = 270
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 332 EDTSQLLQPHSPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 153
E+ + + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 82 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 141
Query: 152 IVRCEERVD 126
I+ C R+D
Sbjct: 142 ILGCTSRID 150
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical protein
C11H1.4a protein.
Length = 996
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 332 EDTSQLLQPHSPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 153
E+ + + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 867
Query: 152 IVRCEERVD 126
I+ C R+D
Sbjct: 868 ILGCTSRID 876
>U88315-5|ABO16438.1| 355|Caenorhabditis elegans Hypothetical
protein C37H5.14 protein.
Length = 355
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = +1
Query: 373 AATTAGDYALRARVSXNGSVSWIKRLDISXPISMQLDKWANDMXSWTV 516
AA+T+ + + + ++++R+ +S ++ D WAN+ W +
Sbjct: 16 AASTSSHQCIGEKGDRQSAAAFLRRMSVSFKLAPVGDYWANNENRWNI 63
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 332 EDTSQLLQPHSPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVP 153
E+ + + C P F D + H G+T+ ++Q+ ++D G GV
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRVVNQLLTELDGAEGGMKGVI 867
Query: 152 IVRCEERVD 126
I+ C R+D
Sbjct: 868 ILGCTSRID 876
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +3
Query: 93 ECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVRIQADL 257
E + T + D L+ YD P + +++N++++ + +E T+ ++
Sbjct: 21 EVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTLDPAEETINFSSEF 80
Query: 258 QMNWIDKRLSWN 293
+ W D+ L WN
Sbjct: 81 ILQWKDEFLFWN 92
>Z83104-2|CAB54203.1| 563|Caenorhabditis elegans Hypothetical
protein F09B12.1b protein.
Length = 563
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 107 NITVPHDRLAPRNVRSGLPPRLQNRSQPDP 196
N+ P D+L + SG+P +LQNR P P
Sbjct: 114 NVPPPDDQL-DWQIASGVPVQLQNRGVPQP 142
>Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical
protein F09B12.1a protein.
Length = 573
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 107 NITVPHDRLAPRNVRSGLPPRLQNRSQPDP 196
N+ P D+L + SG+P +LQNR P P
Sbjct: 124 NVPPPDDQL-DWQIASGVPVQLQNRGVPQP 152
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 147 YDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
+D D+P + L L+ + E + V + ++ W D RL+WN
Sbjct: 65 HDPDAPGRWNYTL-LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 337 RLWRPDVVLLNAAATT-AGDYALRARVSXNGSVSWI 441
++WRPD++L N+A+ + V G V+WI
Sbjct: 48 QIWRPDILLYNSASEDFDSSFKSNEVVYNTGEVNWI 83
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 301 EW-GCSSWLVSSERLWRPDVVLLNAAATTAGDYALRARVSXNG--SVSWIKRLDISXPIS 471
EW G ++ ++W PD + N T ARV +G V + K +D++ P+S
Sbjct: 103 EWNGIERIIIPKSQIWIPDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVDLTCPMS 162
Query: 472 M 474
+
Sbjct: 163 V 163
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 301 EW-GCSSWLVSSERLWRPDVVLLNAAATTAGDYALRARVSXNG--SVSWIKRLDISXPIS 471
EW G ++ ++W PD + N T ARV +G V + K +D++ P+S
Sbjct: 103 EWNGIERIIIPKSQIWIPDGYIFNTVEETEPLENHNARVRYDGRVEVDFNKLVDLTCPMS 162
Query: 472 M 474
+
Sbjct: 163 V 163
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 99 ENATSLSLMIDSLLATYDRD-SPPDSKIVVNLTLH-LRHANIRESESTVRIQADLQMNWI 272
E + + +L+ TYD D P D +V +T + ++ +++ T++ + + W
Sbjct: 24 ETSNTETLLQQLFNQTYDVDMKPSDDLTMVTITPNTFILLSMDQTQETIQYSEEFLLRWY 83
Query: 273 DKRLSWN 293
D L WN
Sbjct: 84 DPILHWN 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,019
Number of Sequences: 27780
Number of extensions: 288019
Number of successful extensions: 963
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -