Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F01
(871 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.008
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 31 0.010
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.018
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 30 0.024
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 30 0.032
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 29 0.042
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.042
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.042
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.042
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.056
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.056
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 28 0.097
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 28 0.13
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.23
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.30
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 2.1
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 6.4
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +3
Query: 96 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 260
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 261 MNWIDKRLSW 290
+ W L+W
Sbjct: 88 LMWEQSHLTW 97
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.008
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 102 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 269
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 270 IDKRLSW 290
+D+RL++
Sbjct: 62 VDRRLAF 68
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 31.5 bits (68), Expect = 0.010
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLL-NAAATTAGDYALRARVSXNGSVSW 438
V S+ +WRPD+VL NA A +A ++ G V W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 30.7 bits (66), Expect = 0.018
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLL-NAAATTAGDYALRARVSXNGSVSW 438
V S+ +WRPD+VL NA A +A + G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 22.2 bits (45), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 304 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 212
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 30.3 bits (65), Expect = 0.024
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSXNGSVSW 438
G V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 29.9 bits (64), Expect = 0.032
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAGDYAL---RARVSXNGSVSWIKRLDISXPISMQLDKWANDMX 504
ER+WRPD N + + R+S +G + + RL I M+L + D
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 505 SWTVIV 522
S +I+
Sbjct: 175 SCPLIL 180
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 29.5 bits (63), Expect = 0.042
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAGDYALRAR----VSXNGSVSWI 441
+++W+PD+VL N A G+Y +R + + NG V W+
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
Score = 22.6 bits (46), Expect = 4.8
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWN 293
K+ VN L ++ N+ E ++ L+ W D +L W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWD 91
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.042
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ NGS ++
Sbjct: 125 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.042
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ NGS ++
Sbjct: 125 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 29.5 bits (63), Expect = 0.042
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSXNGSVSW 438
G + V SE +W PD+VL N A G + +A + G V W
Sbjct: 91 GVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.056
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ NGS ++
Sbjct: 57 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 29.1 bits (62), Expect = 0.056
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSXNGSVSW 438
V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 22.2 bits (45), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 304 TPPAFQLSRLSIQFI*RSACIRTVDSDSRML 212
+PPAF SR + C+R + ++ML
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 28.3 bits (60), Expect = 0.097
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
+ RLW+PDV++ N+A G Y V NG+ ++
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 123 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 281
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 282 LSWN 293
L +N
Sbjct: 95 LRFN 98
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 325 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSXNGSVSWI 441
V R+WRPD +L N A + VS G V W+
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ +GS ++
Sbjct: 57 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ +GS ++
Sbjct: 57 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ +GS ++
Sbjct: 57 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ +GS ++
Sbjct: 57 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSXNGSVSWI 441
G ++ +LW+PD+++ N+A G Y V+ +GS ++
Sbjct: 57 GVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 213 NIRESESTVRIQADLQMNWIDKRLSWN 293
++ E + A L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.6 bits (56), Expect = 0.30
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 307 GCSSWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSXNGSVSW 438
G + V SE +W PD+VL N A G+Y + +A + G V W
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.8 bits (49), Expect = 2.1
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -1
Query: 346 STSVPRTPANCCSPTPPAFQLSRLSIQFI*RSACIRTVDSD-SRMLACLKCRVRLTTILE 170
+T+ P T N + TPP Q+ + + + + + V+ + L L+ VR +T+
Sbjct: 674 TTTTPNTTQNASATTPPP-QVDEVDDKELSGAEEEKEVEKALLKPLLSLEDLVRFSTLEG 732
Query: 169 SGGES-RSYVARSE 131
SGG+S R+ + R +
Sbjct: 733 SGGDSLRTLLQRGQ 746
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.2 bits (45), Expect = 6.4
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = +1
Query: 334 ERLWRPDVVLLNAAATTAGDYALRARVS-----XNGSVSWIKRLDISXPISMQLDKWAND 498
+ LW+PD LNA + AL + S N +V + R+ M+ + D
Sbjct: 69 DSLWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMD 126
Query: 499 MXSWTVIVRXLSMH 540
+ + + S H
Sbjct: 127 IQICPIYIESFSYH 140
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,280
Number of Sequences: 438
Number of extensions: 3772
Number of successful extensions: 40
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -