Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_E24
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 45 7e-05
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 41 0.001
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 41 0.001
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 37 0.018
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 31 0.87
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 30 2.0
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 29 3.5
07_03_1471 + 26751684-26752307 29 4.7
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 29 6.2
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 8.1
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 45.2 bits (102), Expect = 7e-05
Identities = 42/126 (33%), Positives = 57/126 (45%)
Frame = +3
Query: 252 ADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSK 431
A ++ I KPGK N YRPISL + KI ++L RL V I +D Q GF
Sbjct: 971 AYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRLQR-VFLRMIHLD-QTGFLKG 1027
Query: 432 HSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVL 611
+ + TE LI R++ T + D KAFD V + L L G P+ +
Sbjct: 1028 RCISENLIYATE--LIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWIS 1085
Query: 612 IIRDFL 629
I+ L
Sbjct: 1086 WIKGLL 1091
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Frame = +3
Query: 276 PGKPTNET-SSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSKHSCVQQV 452
P K + ET + +RPISL+ KI +LL RL + K++ D +GF K +Q
Sbjct: 377 PKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGF-IKGKTIQDC 433
Query: 453 HRLT-EHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVP 596
E+I +++I L D KAFD + H+ ++ + +MG P
Sbjct: 434 PAWPFEYIHQCQQSKREIVL--LKLDFEKAFDTIEHSAILSVMQHMGFP 480
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 40.7 bits (91), Expect = 0.001
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 1/174 (0%)
Frame = +3
Query: 84 DEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEADVI 263
+E+ AI + P K+PG DG R + L + + + + P + ++
Sbjct: 894 EEIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIV 953
Query: 264 GIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSKHSCV 443
I K +P + YRPISL + + K+ + L RL + + ++ EQ F
Sbjct: 954 LIPKKDQPI-DLKDYRPISLCNVVYKVVSKCLVNRLRPIL--DDLVSKEQSAFIQGRMIT 1010
Query: 444 QQVHRLTEHI-LIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDR 602
E I N++ A D++KA+D+V L L +G R
Sbjct: 1011 DNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHR 1064
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 37.1 bits (82), Expect = 0.018
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 72 PITTDEVRDAIHNLQPRKAPGSDG--IHN--RALKLLPVQLIAMLATILNAAMTH 224
P + DE++DA+ + P KAPG DG +HN K P+ L +L I + + +
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 31.5 bits (68), Expect = 0.87
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 81 TDEVRDAIHNLQPRKAPGSDGIHNRAL-KLLPV--QLIAMLATILNAAMTHCIFPAVWKE 251
T EV + I +QP KAP DGI+ L K P+ Q LA +A T + P +
Sbjct: 224 TQEVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NK 280
Query: 252 ADVIGIHKPGKPTNETSSYRPISLL 326
+ + + K P + YRPISL+
Sbjct: 281 SFITLVPKKSSP-ETVNDYRPISLM 304
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 30.3 bits (65), Expect = 2.0
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Frame = +3
Query: 3 LAPS*STGQVERRASLPPSDAL-PPITTDEVRDAIHNLQPRKAPGSDG----IHNRALKL 167
L P T ++++ + +D L I +E+ AI + P K+ G +G I+ R +
Sbjct: 363 LDPECVTRLIQKKVTAAMNDKLCEDIKEEEIALAIFQIGPLKSLGPNGFPARIYQRNRGI 422
Query: 168 LPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIY 347
+ ++ + I +T P + ++ I +P + +RPISL + + K+
Sbjct: 423 MKQDIVNPVTKIFQTGLT----PMGVNDTAIVLILMSDQPV-DLKDFRPISLCNVVYKVV 477
Query: 348 ERLLRKRL 371
+ L RL
Sbjct: 478 FKCLVNRL 485
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 63 ALPPITTDEVRDAIH--NLQPRKAPGSDGIHNRALKLLPVQLIAMLATILN 209
+ PP+T +++ +A+H L P ++ I N LLP + LAT+++
Sbjct: 6 SFPPLTPEQIAEALHTYGLAPTANLRAEDIANPQPDLLPAVISNFLATVVD 56
>07_03_1471 + 26751684-26752307
Length = 207
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 139 SEPGAFLGCRLWIASLTSSVVMGGNASEGGREALRS 32
S P + + SLTS+ V G S GGR +RS
Sbjct: 5 SNPSLIVAAIFLVISLTSATVANGGRSGGGRRLVRS 40
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 347 RTAP*ETPLEFCYREQNSHRRTVRIPLKTLVRTTSAPPHGAHSD 478
R+ P +T C+ + RRT R+PL+ + +A P H D
Sbjct: 156 RSYPCKTRFRGCFIGKQKSRRTARVPLERSEESRAAIPRRFHWD 199
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 525 DIAKAFDKVWHNGLIYKLYNMG-VPDRLVL 611
D+A+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,279,330
Number of Sequences: 37544
Number of extensions: 446844
Number of successful extensions: 1248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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