Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_E24
(845 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 95 4e-20
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 80 2e-15
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 80 2e-15
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 79 4e-15
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 35 0.063
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 31 1.4
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 30 1.8
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 30 1.8
Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical pr... 28 7.3
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 95.5 bits (227), Expect = 4e-20
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 3/196 (1%)
Frame = +3
Query: 75 ITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEA 254
IT+ E+ + + P A G DGI ++ LP+ + LA + N +++ I P WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387
Query: 255 DVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKILIDEQFGFRSKH 434
+VI I KP K SSYRPISLLS I K+ E+ + KR+ N + + Q GF+ +H
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEH 443
Query: 435 SCVQQVHRLTEHILIGLNRRKQIPTGALF--FDIAKAFDKVWHNGLIYKLYN-MGVPDRL 605
S V ++T I+ GLN K P A+ D+ AFDKV L L G+ ++
Sbjct: 444 STTTAVIQVTNDIIGGLN-MKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKI 502
Query: 606 VLIIRDFLFEPFVSIS 653
L + ++L + + S
Sbjct: 503 KLWLGNYLHKRLIRTS 518
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 80.2 bits (189), Expect = 2e-15
Identities = 54/194 (27%), Positives = 86/194 (44%)
Frame = +3
Query: 42 ASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMT 221
+S+P + PP +E+R + + KA G D I LK +I ++ N +
Sbjct: 536 SSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLH 595
Query: 222 HCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKIL 401
P WK + I K G N +YRPI LL + K++ + L R+ + + +
Sbjct: 596 SRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV 654
Query: 402 IDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLY 581
EQ GFR S + +H L L+ + R QIP +F D KAFD V H + L
Sbjct: 655 --EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLD 710
Query: 582 NMGVPDRLVLIIRD 623
G + ++++
Sbjct: 711 EQGADGAYIDLLKE 724
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 80.2 bits (189), Expect = 2e-15
Identities = 54/194 (27%), Positives = 86/194 (44%)
Frame = +3
Query: 42 ASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMT 221
+S+P + PP +E+R + + KA G D I LK +I ++ N +
Sbjct: 275 SSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLH 334
Query: 222 HCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKIL 401
P WK + I K G N +YRPI LL + K++ + L R+ + + +
Sbjct: 335 SRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV 393
Query: 402 IDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLY 581
EQ GFR S + +H L L+ + R QIP +F D KAFD V H + L
Sbjct: 394 --EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLD 449
Query: 582 NMGVPDRLVLIIRD 623
G + ++++
Sbjct: 450 EQGADGAYIDLLKE 463
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 79.0 bits (186), Expect = 4e-15
Identities = 54/194 (27%), Positives = 87/194 (44%)
Frame = +3
Query: 42 ASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMT 221
+S+P + PP +++R A+ + KA G D I LK +I ++ N +
Sbjct: 365 SSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLH 424
Query: 222 HCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWNFVTANKIL 401
P WK + I K G N +YRPI LL + K++ + L R+ + + +
Sbjct: 425 SRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV 483
Query: 402 IDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLY 581
EQ GFR S + +H L L+ + R QIP +F D KAFD V H + L
Sbjct: 484 --EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLD 539
Query: 582 NMGVPDRLVLIIRD 623
G + ++++
Sbjct: 540 EQGADGAYIDLLKE 553
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1
Query: 631 SNRSFRYRVXGTRSRSRQLTAGVPQGSALSPXI 729
SNRSFR R+ T S + T GVPQG+ LSP +
Sbjct: 55 SNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLL 87
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +3
Query: 516 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFL 629
++ D +KAFD++ H+ L+ KL ++ L++ + +FL
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFL 54
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 35.1 bits (77), Expect = 0.063
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 51 PP--SDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKLLPVQLIAMLATILNAAMTH 224
PP ++ LPP E+R AI++ KA GSD I LK +I ++ N +
Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445
Query: 225 CIFPAVWKEADVIGIHKPG 281
P WK + I K G
Sbjct: 446 GNIPKDWKTSKTTLIFKKG 464
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 604 SCSSYETSCSNRSFRYRVXGTRSR-SRQLTAGVPQGSALSPXI 729
+CS Y+ NR+F ++ S+ S +++GVPQGS P +
Sbjct: 849 TCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLL 891
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 262 ITSASFHTAGKMQCVIAAFKIVANIAISWT 173
+ +A+F T K+ C++ AFK + +I IS T
Sbjct: 25 VANATFLTISKLICLVVAFKFIKHIPISTT 54
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 262 ITSASFHTAGKMQCVIAAFKIVANIAISWT 173
+ +A+F T K+ C++ AFK + +I IS T
Sbjct: 25 VANATFLTISKLICLVVAFKFIKHIPISTT 54
>Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical
protein F53F1.8 protein.
Length = 332
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 178 WTGKSLSARLWMPSEPGAFLGCRLWIASLTSSVVMGGNASEGGREALRSTCPV 20
+TG+ + AR W EP + W+ S+ + GG +G A+ S C V
Sbjct: 72 FTGQVIPARRWF--EPFLIYN-QSWLGSIFFVITYGGRCIQGATAAILSFCRV 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,661,305
Number of Sequences: 27780
Number of extensions: 369818
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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