Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E22
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0303 - 20010761-20011756                                         30   2.1  
08_02_0779 - 21128736-21128945                                         29   6.3  
05_01_0110 - 741968-742279                                             29   6.3  
11_06_0020 - 19304740-19304790,19304869-19304973,19305063-193051...    28   8.3  

>05_04_0303 - 20010761-20011756
          Length = 331

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 640 RPPISGEPEXQVVPVAGHHRHP 575
           R P  G+P     P+ GHH HP
Sbjct: 215 RAPAGGDPYPPFAPMGGHHHHP 236


>08_02_0779 - 21128736-21128945
          Length = 69

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
 Frame = +2

Query: 215 AHIQWLLRRSTLHR-------CRVLPHLRS*SIL*APR 307
           AH+ +L RRS+L R       C++ P+LR  S+  APR
Sbjct: 7   AHVSYLRRRSSLERGEAMHQRCQIRPYLRRSSVRSAPR 44


>05_01_0110 - 741968-742279
          Length = 103

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 565 WKTKGAGGVPQL--ARPXVPARXRXGVAXWFPGAPC 666
           W+ + A G P+   ARP  P R   GV+    G+PC
Sbjct: 42  WEPRAAVGSPRATTARPGAPHRRGLGVSRRHQGSPC 77


>11_06_0020 -
           19304740-19304790,19304869-19304973,19305063-19305113,
           19305377-19305442,19305722-19305882,19306050-19306146,
           19306516-19306563,19307173-19307261,19307447-19307492
          Length = 237

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 35  VLLGRGVSPFATSAGRVQGFLSKSFLAFV 121
           + LG   SPF  ++G + G L  +FLA V
Sbjct: 180 IALGAAQSPFGVASGAIAGHLVATFLAIV 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,622,547
Number of Sequences: 37544
Number of extensions: 349160
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)