Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E22
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical...    29   3.2  
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    28   7.4  

>Z69663-2|CAA93509.2|  819|Caenorhabditis elegans Hypothetical
           protein K02B9.2 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -3

Query: 639 DPXSXASRNXRSCQLRDTTGTLSLPEXA*GFRSQEADDQYEHQREADQAHARLVQLRQVH 460
           +P    +RN    +   T  + S  E A  FR Q     Y +QREAD   +RLVQ++   
Sbjct: 219 EPVIQDTRNRNRSESSSTMSSQSRTEHAPIFRLQ-----YNYQREADNRSSRLVQIQGHS 273

Query: 459 GP 454
            P
Sbjct: 274 AP 275


>AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical
           protein Y50E8A.6 protein.
          Length = 609

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 71  SAGRVQGFLSKSFLAFVTFNLINYSLVGSRGPYNEH 178
           S G+V G L K  ++  T+ + +  +V + GP+N+H
Sbjct: 249 SYGKVNGALVKDHISGETYEIHSKVVVNATGPFNDH 284


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 90  PWTL-PADVAKGETPRPRSTRSATIRD 13
           PWT+ PA  ++G +PR RSTR A ++D
Sbjct: 462 PWTVNPA--SEGPSPRVRSTRRAIVQD 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,615
Number of Sequences: 27780
Number of extensions: 276972
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)