Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E19
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.46 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.4  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 241 VRVHRANTGRSSNELDRQTTELERR 315
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +3

Query: 672 RVGXPPLXMXPXFFPGXXPXAPPLGGRWPXFPXGSP-XPRLPXGA-XXPPRP 821
           R   PP+   P   P   P  PP     P  P G+P  P LP  A   PP P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAP--PSLPMGAPAAPPLPPSAPIAPPLP 460


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = -1

Query: 820 GRGGXXAPXGSRGXGEPXGXXGHRPPKGGAXGXXPGKKXGXXXRGG 683
           GRGG     G RG     G  G R  +GG  G   G+      RGG
Sbjct: 24  GRGGFG---GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 820 GRGGXXAPXGSRGX--GEPXGXXGHRPPKGGAXGXXPGKKXG 701
           GRGG  A  G RG   G   G  G R  +GG+ G   G K G
Sbjct: 31  GRGG--ARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/58 (27%), Positives = 19/58 (32%)
 Frame = +2

Query: 647  AGAXPTPWPXWXPPPXXXPXFLSXXTXXXXXXXXXXXXXSXGLPXXPAPXGGXXXPPP 820
            +GA P P P    PP   P   +                S G+P  P P  G    PP
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSG-APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 244 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 137
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = -1

Query: 820 GRGGXX-APXGSRGXGEPXGXXGHRPPKGGAXGXXPGKKXGXXXRGGXP 677
           G GG    P G  G G   G   H    GG  G   G + G    GG P
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,550
Number of Sequences: 5004
Number of extensions: 50657
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)