Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E17
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    30   0.48 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   5.9  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    26   5.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.9  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   7.8  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 49  RYRVEGTRSRPRHVTAGVRKAPPSPRLLFSLYINDIP 159
           RY +E  +SRP     G R     P+L FSL  N +P
Sbjct: 338 RYILENGQSRPDRTGTGTRSVFAPPQLRFSLRNNTLP 374


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 51/188 (27%), Positives = 70/188 (37%), Gaps = 8/188 (4%)
 Frame = +2

Query: 2   TGKSSSYETTCR-TVRSDIESRERVPGPVTSQPES-ARLRPLPXYYSVCI-STIYP---- 160
           TG SSS  T    TV     S   +P P TS   +     PLP   + C  ST  P    
Sbjct: 181 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240

Query: 161 -GLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSK 337
             L  PI  + P T  S+T +               P  + S S  +T T       S+ 
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTT 299

Query: 338 GVALRTPR*ASLSRLGASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRR 517
            V    P  ++ S    + TPPPP + S   TS    P  S    + +++      T+  
Sbjct: 300 PVTPTVPPTSTSS----TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355

Query: 518 YAIVPPSS 541
              VPP+S
Sbjct: 356 TPTVPPTS 363


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 280 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 396
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 449 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 559
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 510 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 406
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 48  PISSRGNAFPAPSRHSRSPQGSALSPXTIQFVYQRYTP 161
           PI+ +    PA   HS++    ALSP + +    RY P
Sbjct: 135 PIALQNLFSPASDTHSQNIHDEALSPSSFRVSRSRYFP 172


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +1

Query: 157 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 327
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 328 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 417
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +1

Query: 328 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 498
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 499 RPHIKTVRDR 528
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,473,455
Number of Sequences: 5004
Number of extensions: 74921
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)