Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E15
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.26 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.4  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.4  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   5.6  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   5.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   7.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +1

Query: 103 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 282
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 283 GSALSP 300
           GS +SP
Sbjct: 424 GSIVSP 429


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 455 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 571
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 624 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 734
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 257 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 367
           + +QP+  K  PSP   F L+   + RS ET+L  +A
Sbjct: 47  IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 243 AFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTP-PSTTRVGRRRCFID 419
           + P PS    S +    L   +    S+ +   R+P  RS P+TP    TR      ++ 
Sbjct: 75  SLPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS-PLTPLKGNTRASPEIRYVS 133

Query: 420 DFRPQLPPWDSGSGS 464
           DF P   P++    S
Sbjct: 134 DFTPPSSPFEDMQAS 148


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 685 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 581
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 213 VRQVVSYDEHEPVWHSHV 160
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +2

Query: 332 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 502
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 503 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 592
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 503 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 673
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 674 RPHIKTVRDR 703
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 465  GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPP 584
            GAS+  P    R SS       P  AS++    +I  PPP
Sbjct: 889  GASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPP 928


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 43/172 (25%), Positives = 64/172 (37%), Gaps = 7/172 (4%)
 Frame = +3

Query: 222 PISSRGNAFPAP-SRHSRSPARLRPLPXYYSVCI-STIYP-----GLRRPIWRSSPMTPP 380
           P S+   + P P +  S +     PLP   + C  ST  P      L  PI  + P T  
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256

Query: 381 STTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSRLG 560
           S+T +               P  + S S  +T T       S+  V    P  ++ S   
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTTPVTPTVPPTSTSS--- 312

Query: 561 ASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS 716
            + TPPPP + S   TS    P  S    + +++      T+     VPP+S
Sbjct: 313 -TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,659,529
Number of Sequences: 5004
Number of extensions: 84615
Number of successful extensions: 276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)