Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E14
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   180   2e-46
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   180   2e-46
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    29   1.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  180 bits (439), Expect = 2e-46
 Identities = 83/147 (56%), Positives = 111/147 (75%)
 Frame = +3

Query: 201 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRR 380
           + +L  P SK++K+EI+EAVTIIETPPMV VGVVGY+ TP GLR+L TVWAEH+SE+ +R
Sbjct: 57  VRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116

Query: 381 RFYKNWYKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLKQRQK 560
           RFYKNW+K   KAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ+      QK
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174

Query: 561 XAHIMEIQLNXGTIEDKVKWAXKHLXK 641
            AH+MEIQ+N G++ DKV+WA +H  K
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEK 201



 Score =  108 bits (260), Expect = 9e-25
 Identities = 46/61 (75%), Positives = 53/61 (86%)
 Frame = +2

Query: 47  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG 
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 227 K 229
           K
Sbjct: 66  K 66



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 767 KGXRKXACXGPWXPSRV 817
           +G RK AC G W P+ V
Sbjct: 244 RGLRKVACIGAWHPANV 260


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  180 bits (438), Expect = 2e-46
 Identities = 82/147 (55%), Positives = 111/147 (75%)
 Frame = +3

Query: 201 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRR 380
           + +L  P SK++K+EI+EAVT+IETPPMV VGVVGY+ TP GLR+L TVWAEH+SE+ +R
Sbjct: 57  VRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116

Query: 381 RFYKNWYKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLKQRQK 560
           RFYKNW+K   KAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ+      QK
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174

Query: 561 XAHIMEIQLNXGTIEDKVKWAXKHLXK 641
            AH+MEIQ+N G++ DKV+WA +H  K
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEK 201



 Score =  108 bits (260), Expect = 9e-25
 Identities = 46/61 (75%), Positives = 53/61 (86%)
 Frame = +2

Query: 47  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG 
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 227 K 229
           K
Sbjct: 66  K 66



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 767 KGXRKXACXGPWXPSRV 817
           +G RK AC G W P+ V
Sbjct: 244 RGLRKVACIGAWHPANV 260


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 208 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMSGVLKIFCAT 32
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P + V  IF  +
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIFLIS 403

Query: 31  WLEDSRKLPS 2
                  LPS
Sbjct: 404 AALLCSNLPS 413


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 35  RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 154
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,567
Number of Sequences: 5004
Number of extensions: 54320
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)