Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_E14
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 173 2e-43
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 171 5e-43
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171... 29 3.7
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 29 4.9
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850... 28 8.5
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 173 bits (421), Expect = 2e-43
Identities = 82/145 (56%), Positives = 104/145 (71%), Gaps = 1/145 (0%)
Frame = +3
Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
P SK++KKE EAVTIIETPP+V VG+V Y+ TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122
Query: 399 YKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLK-QRQKXAHIM 575
K KAFTK + K+ + G+K IQ M +Y S+VRVIAHTQ+ +K +QK AH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLM 182
Query: 576 EIQLNXGTIEDKVKWAXKHLXKPXP 650
EIQ+N GTI DKV + K K P
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIP 207
Score = 110 bits (265), Expect = 1e-24
Identities = 45/61 (73%), Positives = 54/61 (88%)
Frame = +2
Query: 47 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PG
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 227 K 229
K
Sbjct: 66 K 66
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 767 KGXRKXACXGPWXPSRV 817
+G RK AC G W P+RV
Sbjct: 247 RGLRKVACIGAWHPARV 263
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 171 bits (417), Expect = 5e-43
Identities = 82/145 (56%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
Frame = +3
Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
P SK++KKE EAVTIIETPP+V VG+V Y+ TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122
Query: 399 YKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLK-QRQKXAHIM 575
K KAFTK + K+ + G+K IQ M +Y SVVRVI HTQ+ +K +QK AH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLM 182
Query: 576 EIQLNXGTIEDKVKWAXKHLXKPXP 650
EIQ+N GTI DKV + K K P
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIP 207
Score = 109 bits (262), Expect = 3e-24
Identities = 44/61 (72%), Positives = 54/61 (88%)
Frame = +2
Query: 47 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PG
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 227 K 229
K
Sbjct: 66 K 66
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 767 KGXRKXACXGPWXPSRV 817
+G RK AC G W P+RV
Sbjct: 247 RGLRKVACIGAWHPARV 263
>02_01_0258 -
1709672-1709752,1710277-1710460,1710627-1710841,
1711321-1711390,1711525-1711607,1711720-1711884,
1712068-1712172,1713021-1713140,1713620-1713718,
1713790-1713885,1714367-1714480,1715265-1715372,
1716200-1716264,1716430-1716609,1716747-1717397,
1717497-1717565,1717639-1717858
Length = 874
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 378 RRFYKNWYKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYC 503
RRF + KC K + + ++ +LGR + K+F +IR C
Sbjct: 163 RRFTRLMQKCADKLGAEPALEFFGKLGRDTGAKEFNALIRIC 204
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 467 NTKRFQXXDPLL*CCKSHCPHSNEXVKTATKEXSHYGNP 583
N +RF DPLL CC H P+ T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTG--ATCDRTATVWGDP 333
>07_01_1004 +
8500584-8501881,8502194-8502402,8503024-8503266,
8503381-8503697,8503891-8504250
Length = 808
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 274 VSMMVTASTISFLLIFETGTVRFSNHVGHTGLITDKSSQMNRFARVV 134
++M VT +T FLL+F T+ S G TD+ S + F +
Sbjct: 1 MTMKVTTATAHFLLVFLASTISHSVICSALGNETDQLSSLLEFKNAI 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,169,793
Number of Sequences: 37544
Number of extensions: 382310
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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