Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E14
         (873 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   237   2e-62
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   237   2e-62
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   237   2e-62
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   237   2e-62
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   237   2e-62
AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD...   116   3e-26
AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC...   106   5e-23

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  237 bits (579), Expect = 2e-62
 Identities = 103/142 (72%), Positives = 122/142 (85%)
 Frame = +3

Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
           P SKINKKE+VEAVT++ETPPM+ VG VGYI TP GLRAL+ VWA+H+SE+CRRRFYKNW
Sbjct: 74  PGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNW 133

Query: 399 YKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLKQRQKXAHIME 578
           YK   KAFTKAS KW D+LG+KSI+ DF  M+RYC V+RVIAH+Q+ L+KQRQK AH+ME
Sbjct: 134 YKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVME 193

Query: 579 IQLNXGTIEDKVKWAXKHLXKP 644
           IQLN G+IEDKVKWA +HL KP
Sbjct: 194 IQLNGGSIEDKVKWAREHLEKP 215



 Score =  116 bits (280), Expect = 3e-26
 Identities = 53/66 (80%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
 Frame = +2

Query: 47  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
           F  P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPG 
Sbjct: 17  FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 76

Query: 227 K-NQQE 241
           K N++E
Sbjct: 77  KINKKE 82



 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 767 KGXRKXACXGPWXPSRV 817
           KG RK AC G W PSRV
Sbjct: 257 KGLRKVACIGAWHPSRV 273



 Score = 29.1 bits (62), Expect = 8.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 652 VXSVFXPXEMIDCFXXXXXXXXXXXXSXWPPXKLPXKT 765
           V +VF   EMIDC             S W   KLP KT
Sbjct: 218 VSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKT 255


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  237 bits (579), Expect = 2e-62
 Identities = 103/142 (72%), Positives = 122/142 (85%)
 Frame = +3

Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
           P SKINKKE+VEAVT++ETPPM+ VG VGYI TP GLRAL+ VWA+H+SE+CRRRFYKNW
Sbjct: 63  PGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNW 122

Query: 399 YKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLKQRQKXAHIME 578
           YK   KAFTKAS KW D+LG+KSI+ DF  M+RYC V+RVIAH+Q+ L+KQRQK AH+ME
Sbjct: 123 YKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVME 182

Query: 579 IQLNXGTIEDKVKWAXKHLXKP 644
           IQLN G+IEDKVKWA +HL KP
Sbjct: 183 IQLNGGSIEDKVKWAREHLEKP 204



 Score =  116 bits (280), Expect = 3e-26
 Identities = 53/66 (80%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
 Frame = +2

Query: 47  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
           F  P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPG 
Sbjct: 6   FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65

Query: 227 K-NQQE 241
           K N++E
Sbjct: 66  KINKKE 71



 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 767 KGXRKXACXGPWXPSRV 817
           KG RK AC G W PSRV
Sbjct: 246 KGLRKVACIGAWHPSRV 262



 Score = 29.1 bits (62), Expect = 8.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 652 VXSVFXPXEMIDCFXXXXXXXXXXXXSXWPPXKLPXKT 765
           V +VF   EMIDC             S W   KLP KT
Sbjct: 207 VSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKT 244


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  237 bits (579), Expect = 2e-62
 Identities = 103/142 (72%), Positives = 122/142 (85%)
 Frame = +3

Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
           P SKINKKE+VEAVT++ETPPM+ VG VGYI TP GLRAL+ VWA+H+SE+CRRRFYKNW
Sbjct: 50  PGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNW 109

Query: 399 YKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLKQRQKXAHIME 578
           YK   KAFTKAS KW D+LG+KSI+ DF  M+RYC V+RVIAH+Q+ L+KQRQK AH+ME
Sbjct: 110 YKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVME 169

Query: 579 IQLNXGTIEDKVKWAXKHLXKP 644
           IQLN G+IEDKVKWA +HL KP
Sbjct: 170 IQLNGGSIEDKVKWAREHLEKP 191



 Score =  105 bits (252), Expect = 8e-23
 Identities = 48/58 (82%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +2

Query: 71  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGFK-NQQE 241
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPG K N++E
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKE 58



 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 767 KGXRKXACXGPWXPSRV 817
           KG RK AC G W PSRV
Sbjct: 233 KGLRKVACIGAWHPSRV 249



 Score = 29.1 bits (62), Expect = 8.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 652 VXSVFXPXEMIDCFXXXXXXXXXXXXSXWPPXKLPXKT 765
           V +VF   EMIDC             S W   KLP KT
Sbjct: 194 VSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKT 231


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  237 bits (579), Expect = 2e-62
 Identities = 103/142 (72%), Positives = 122/142 (85%)
 Frame = +3

Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
           P SKINKKE+VEAVT++ETPPM+ VG VGYI TP GLRAL+ VWA+H+SE+CRRRFYKNW
Sbjct: 50  PGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNW 109

Query: 399 YKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLKQRQKXAHIME 578
           YK   KAFTKAS KW D+LG+KSI+ DF  M+RYC V+RVIAH+Q+ L+KQRQK AH+ME
Sbjct: 110 YKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVME 169

Query: 579 IQLNXGTIEDKVKWAXKHLXKP 644
           IQLN G+IEDKVKWA +HL KP
Sbjct: 170 IQLNGGSIEDKVKWAREHLEKP 191



 Score =  105 bits (252), Expect = 8e-23
 Identities = 48/58 (82%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +2

Query: 71  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGFK-NQQE 241
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPG K N++E
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKE 58



 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 767 KGXRKXACXGPWXPSRV 817
           KG RK AC G W PSRV
Sbjct: 233 KGLRKVACIGAWHPSRV 249



 Score = 29.1 bits (62), Expect = 8.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 652 VXSVFXPXEMIDCFXXXXXXXXXXXXSXWPPXKLPXKT 765
           V +VF   EMIDC             S W   KLP KT
Sbjct: 194 VSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKT 231


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  237 bits (579), Expect = 2e-62
 Identities = 103/142 (72%), Positives = 122/142 (85%)
 Frame = +3

Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
           P SKINKKE+VEAVT++ETPPM+ VG VGYI TP GLRAL+ VWA+H+SE+CRRRFYKNW
Sbjct: 63  PGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNW 122

Query: 399 YKCXXKAFTKASXKWQDELGRKSIQKDFXXMIRYCSVVRVIAHTQMXLLKQRQKXAHIME 578
           YK   KAFTKAS KW D+LG+KSI+ DF  M+RYC V+RVIAH+Q+ L+KQRQK AH+ME
Sbjct: 123 YKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVME 182

Query: 579 IQLNXGTIEDKVKWAXKHLXKP 644
           IQLN G+IEDKVKWA +HL KP
Sbjct: 183 IQLNGGSIEDKVKWAREHLEKP 204



 Score =  116 bits (280), Expect = 3e-26
 Identities = 53/66 (80%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
 Frame = +2

Query: 47  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
           F  P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPG 
Sbjct: 6   FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65

Query: 227 K-NQQE 241
           K N++E
Sbjct: 66  KINKKE 71



 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 767 KGXRKXACXGPWXPSRV 817
           KG RK AC G W PSRV
Sbjct: 246 KGLRKVACIGAWHPSRV 262



 Score = 29.1 bits (62), Expect = 8.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 652 VXSVFXPXEMIDCFXXXXXXXXXXXXSXWPPXKLPXKT 765
           V +VF   EMIDC             S W   KLP KT
Sbjct: 207 VSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKT 244


>AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD,
           isoform D protein.
          Length = 161

 Score =  116 bits (280), Expect = 3e-26
 Identities = 53/66 (80%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
 Frame = +2

Query: 47  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
           F  P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPG 
Sbjct: 6   FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65

Query: 227 K-NQQE 241
           K N++E
Sbjct: 66  KINKKE 71



 Score =  113 bits (272), Expect = 3e-25
 Identities = 47/61 (77%), Positives = 55/61 (90%)
 Frame = +3

Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNW 398
           P SKINKKE+VEAVT++ETPPM+ VG VGYI TP GLRAL+ VWA+H+SE+CRRRFYKNW
Sbjct: 63  PGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNW 122

Query: 399 Y 401
           Y
Sbjct: 123 Y 123


>AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC,
           isoform C protein.
          Length = 125

 Score =  106 bits (254), Expect = 5e-23
 Identities = 45/59 (76%), Positives = 53/59 (89%)
 Frame = +3

Query: 219 PVSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKN 395
           P SKINKKE+VEAVT++ETPPM+ VG VGYI TP GLRAL+ VWA+H+SE+CRRRFYKN
Sbjct: 50  PGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 108



 Score =  105 bits (252), Expect = 8e-23
 Identities = 48/58 (82%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
 Frame = +2

Query: 71  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGFK-NQQE 241
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPG K N++E
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKE 58


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,085,867
Number of Sequences: 53049
Number of extensions: 632941
Number of successful extensions: 1501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)