Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E13
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   218   4e-57
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    32   0.54 
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  218 bits (532), Expect = 4e-57
 Identities = 107/200 (53%), Positives = 130/200 (65%)
 Frame = +3

Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQAXGHIIEK 542
           SGQGAFGNMCRGG MFAP K +RRWH                         QA GH+I++
Sbjct: 86  SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145

Query: 543 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAG*G*NAQPSSYXA*G 722
           + E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S R RAG G           G
Sbjct: 146 VAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLG 205

Query: 723 ALIIFNKDQGLTRAFRNIPG 782
            ++I+ +D    RAFRNIPG
Sbjct: 206 PVVIYGQDAECARAFRNIPG 225


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
 Frame = +3

Query: 162 QPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV 341
           +PS S+    AP +P          + N R    V K   H+    SW T     +  R 
Sbjct: 111 KPSVSKIAEAAP-KPIFKVARGTVKTVNKRGTKGVQKMPNHRLEGNSWETNGLQNQTARG 169

Query: 342 RGGGTHR---SGQGAFGNMCRGGRMFAPTKP 425
            GGG  R   SG    G   RGGR     KP
Sbjct: 170 GGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 316
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,942
Number of Sequences: 27780
Number of extensions: 321743
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)