Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E10
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    30   2.9  
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835...    29   6.8  
05_05_0139 - 22655569-22655820                                         29   6.8  
04_01_0034 - 401208-402923                                             24   9.9  

>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 357 SWRGGXQPLXXPXPPXXPXXPPPSP 431
           S R G  PL  P  P  P  PPP+P
Sbjct: 396 SHRSGLPPLAAPLAPSRPPSPPPAP 420


>05_07_0236 -
           28582157-28582552,28582639-28582911,28583324-28583560,
           28583653-28583694,28583782-28583964,28584393-28584524,
           28585605-28586057
          Length = 571

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = +3

Query: 330 QGNGAXAX---PSWRGGXQPLXXPXPPXXPXXPPPSP 431
           QG G  A    P   G    L  P PP  P  PPP P
Sbjct: 88  QGKGHPAPTMPPPSSGSGHTLPSPPPPLPPLLPPPQP 124


>05_05_0139 - 22655569-22655820
          Length = 83

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/71 (25%), Positives = 22/71 (30%)
 Frame = -3

Query: 636 PGXXXRAGXTXGGGGGXRPXXXXXXXXAGXGXXPRRXAXXLXXQXQGXXAGRXXRGXSXX 457
           P     AG   GGGGG R            G    +    +     G  AGR     +  
Sbjct: 13  PAMPPAAGDRAGGGGGGRAARAALLPPPRRGQIKEQIIKDIVAAFSGVIAGRGRNDRNGG 72

Query: 456 GGXXPRXDXDS 424
           GG     D D+
Sbjct: 73  GGVPVSDDTDN 83


>04_01_0034 - 401208-402923
          Length = 571

 Score = 24.2 bits (50), Expect(2) = 9.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 533 RGXXPXPAXXXXXXXXGRXPPPPPXVXP 616
           R   P P          R PPPPP + P
Sbjct: 304 RPAPPPPPPQQQRAKPSRPPPPPPPLDP 331



 Score = 22.2 bits (45), Expect(2) = 9.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 590 PPPPPXVXPARXXXP 634
           PPPPP   P R   P
Sbjct: 324 PPPPPLDPPPRAAAP 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,328
Number of Sequences: 37544
Number of extensions: 292957
Number of successful extensions: 2083
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)