Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_E09
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 32 0.58
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 32 0.58
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 32 0.58
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 32 0.58
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 32 0.58
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 32 0.58
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 29 4.1
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 29 4.1
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 4.1
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 29 4.1
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 29 4.1
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 29 4.1
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 4.1
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 4.1
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 4.1
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 29 5.4
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 29 5.4
U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective fasci... 29 5.4
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 29 5.4
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 29 5.4
AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormo... 29 5.4
Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 28 7.1
Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 28 7.1
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 28 7.1
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 28 7.1
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 28 7.1
Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical p... 28 9.4
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical pr... 28 9.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.4
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 28 9.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.4
AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical ... 28 9.4
AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical ... 28 9.4
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 27 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 55 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 97
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 134 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 114 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 156
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = -2
Query: 659 EKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 489
++ P+ ++ ++LR+P + + ++ P+ ++ +RLD TE R L+HG
Sbjct: 32 QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +1
Query: 247 P*PARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRRS 393
P P R R A R RS + SP+ RR SP + P RRRRS
Sbjct: 422 PAPKRAKSRSKSPPAPRRR-RSPSQSKSPAPRRRRSPSKSPQAPRRRRS 469
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 521 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 429
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1221 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 521 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 429
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1031 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 690 CHHCADRDQGRHSGTYXWXRCSGF 761
CH C D+ G+H G C GF
Sbjct: 6 CHICNDKSTGKHYGAISCDGCKGF 29
>Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical
protein F58G6.5a protein.
Length = 499
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 663 IAGREPTA-QCHHCADRDQGRHSGTYXWXRCSGF 761
+ G E T +C C D GRH GT C GF
Sbjct: 9 LKGEEFTGLKCRVCGDSRAGRHYGTIACNGCKGF 42
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 690 CHHCADRDQGRHSGTYXWXRCSGF 761
CH C D+ G+H G C GF
Sbjct: 6 CHICNDKSTGKHYGAISCDGCKGF 29
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
QC C DR G+H G C GF
Sbjct: 40 QCMVCGDRSAGKHYGVMACYGCKGF 64
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 663 IAGREPTA-QCHHCADRDQGRHSGTYXWXRCSGF 761
+ G E T +C C D GRH GT C GF
Sbjct: 19 LKGEEFTGLKCRVCGDSRAGRHYGTIACNGCKGF 52
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -2
Query: 545 GTEAGRR----VRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPP 405
GTE+G R RQA + H PP + PP+ A P P + +A PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 195 KGVVRSMALYGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 317
+ +++ ALYGAP W L+ N+ L R+ A+RA G
Sbjct: 687 QALIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
QC C DR G+H G C GF
Sbjct: 35 QCMVCGDRSAGKHYGVMACYGCKGF 59
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
QC C DR G+H G C GF
Sbjct: 35 QCMVCGDRSAGKHYGVMACYGCKGF 59
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
QC C DR G+H G C GF
Sbjct: 35 QCMVCGDRSAGKHYGVMACYGCKGF 59
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 690 CHHCADRDQGRHSGTYXWXRCSGF 761
CH C+D GRH G C GF
Sbjct: 21 CHICSDVATGRHYGAIACNGCKGF 44
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 690 CHHCADRDQGRHSGTYXWXRCSGF 761
CH C+D GRH G C GF
Sbjct: 77 CHICSDVATGRHYGAIACNGCKGF 100
>U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective
fasciculation of axonsprotein 1 protein.
Length = 419
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 678 PTAQCHHCADRDQGRHSGTYXWXRCSGF 761
PT C C D G+H G CSGF
Sbjct: 98 PTLCCAVCGDVSSGKHYGILACNGCSGF 125
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 690 CHHCADRDQGRHSGTYXWXRCSGF 761
CH C+D GRH G C GF
Sbjct: 22 CHICSDVATGRHYGAIACNGCKGF 45
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 690 CHHCADRDQGRHSGTYXWXRCSGF 761
CH C+D GRH G C GF
Sbjct: 43 CHICSDVATGRHYGAIACNGCKGF 66
>AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormone
receptor FAX-1 protein.
Length = 419
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 678 PTAQCHHCADRDQGRHSGTYXWXRCSGF 761
PT C C D G+H G CSGF
Sbjct: 98 PTLCCAVCGDVSSGKHYGILACNGCSGF 125
>Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
+C C D GRH GT C GF
Sbjct: 150 KCRVCGDSRAGRHYGTIACNGCKGF 174
>Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
+C C D GRH GT C GF
Sbjct: 132 KCRVCGDSRAGRHYGTIACNGCKGF 156
>Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
+C C D GRH GT C GF
Sbjct: 150 KCRVCGDSRAGRHYGTIACNGCKGF 174
>Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 687 QCHHCADRDQGRHSGTYXWXRCSGF 761
+C C D GRH GT C GF
Sbjct: 132 KCRVCGDSRAGRHYGTIACNGCKGF 156
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 663 IAGREPTAQCHHCADRDQGRHSGTYXWXRCSGF 761
I G E T C C D GRH G C GF
Sbjct: 45 IDGEESTI-CSVCCDEASGRHYGVVACFGCKGF 76
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 663 IAGREPTAQCHHCADRDQGRHSGTYXWXRCSGF 761
I G E T C C D GRH G C GF
Sbjct: 45 IDGEESTI-CSVCCDEASGRHYGVVACFGCKGF 76
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 663 IAGREPTAQCHHCADRDQGRHSGTYXWXRCSGF 761
I G E T C C D GRH G C GF
Sbjct: 45 IDGEESTI-CSVCCDEASGRHYGVVACFGCKGF 76
>Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical
protein Y57G11C.38 protein.
Length = 317
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 633 HGCFGRYLFKIAGREPTAQCHHCADRDQG 719
H C G Y + G+ P + C DRD G
Sbjct: 156 HTCQGNYCVSVRGQTPYSYCGGVWDRDTG 184
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 607 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 473
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 607 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 473
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical
protein T22H6.1 protein.
Length = 206
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = -2
Query: 386 LRLQVPGWRPGEQARRLEGD------SAVSSDRPDRDRAL 285
LRLQV G + GEQ + G +S++ P RDRAL
Sbjct: 77 LRLQVKGLKHGEQITKSSGKCNSKKLDTISAETPLRDRAL 116
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 506 PRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPPVIGSERLRLQVPGWRP 357
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 506 PRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPPVIGSERLRLQVPGWRP 357
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 601 RHPRSRPTQSARTGRTASTVRR--PADGSAKRRDHASSTDRRDWSLRA 464
R RSR + +R R+ S+ R P S +R + S + +RD LRA
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLQLRA 151
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 506 PRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPPVIGSERLRLQVPGWRP 357
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical
protein T22D1.8 protein.
Length = 400
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -1
Query: 294 SRAADVAAPRRSCGSGRGT----IREPRIVPSTAPPP-SNVSLSSTI 169
+R+ ++ P SC S R IR+P + +T PPP S+ S+ TI
Sbjct: 289 TRSRSLSIPVYSCRSARYAACMDIRDPSVSTTTVPPPVSSTSIPVTI 335
>AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical
protein ZK616.8 protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -2
Query: 440 PFPP-RAKLATPPVIGSERLRLQVPGWRPGEQARRLEGDSAVSSDRPDRDRALRTSQRRD 264
PF P + +TPPV R RLQ Q E DS V P+ RA + +
Sbjct: 227 PFSPSKQPTSTPPVSEGNRKRLQTKVVERSNQIES-EMDSFVKKIEPNERRATQYNHSNS 285
Query: 263 VLAGQGVAPYGS 228
+ P G+
Sbjct: 286 LSGSNEAVPPGN 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,116
Number of Sequences: 27780
Number of extensions: 354000
Number of successful extensions: 1723
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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