Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E07
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   2.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.1  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 484 PXMTLNLTERAYCADVEYP 540
           P   +N+T + YC D+E P
Sbjct: 314 PGTGINVTLKGYCIDMEVP 332


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 389 FTGASCAATCIVWLAXKSQHF 327
           F G +   TCI+WLA    +F
Sbjct: 707 FIGFTMYTTCIIWLAFVPIYF 727


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 389 FTGASCAATCIVWLAXKSQHF 327
           F G +   TCI+WLA    +F
Sbjct: 797 FIGFTMYTTCIIWLAFVPIYF 817


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 298 PSSHHHXRQHPGPVHP 251
           P S+H  + HP   HP
Sbjct: 313 PPSYHPHQHHPSQYHP 328


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 DRSWMLPXMMMGRRFLWL 310
           D+ W    M++ R FLW+
Sbjct: 475 DQDWGFVAMVLDRLFLWI 492


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 200 HLTWQSQLPAIR 165
           HL W S +P+IR
Sbjct: 470 HLVWNSWMPSIR 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,958
Number of Sequences: 438
Number of extensions: 4511
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)