Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_E06
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   297   2e-81
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   296   2e-81
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    30   0.36 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   1.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.5  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  297 bits (728), Expect = 2e-81
 Identities = 132/200 (66%), Positives = 166/200 (83%)
 Frame = +2

Query: 50  FQHPVHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 409
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+K 
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 410 KKKAFTKASXKWQDELGRKSIEKDFXXMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
           KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 590 NGGTIEDKVKWATXHLEKPI 649
           NGG++ DKV+WA  H EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203



 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = +1

Query: 739 GTQRXYPVKTHXGLXKVACIGAWHPSRVSFTVXRA 843
           GT+R  P KTH GL KVACIGAWHP+ V +TV RA
Sbjct: 234 GTKRL-PRKTHRGLRKVACIGAWHPANVQWTVARA 267



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 660 SVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR 761
           S F Q+EMID I            +RW TK LPR
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  296 bits (727), Expect = 2e-81
 Identities = 131/200 (65%), Positives = 166/200 (83%)
 Frame = +2

Query: 50  FQHPVHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 409
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+K 
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 410 KKKAFTKASXKWQDELGRKSIEKDFXXMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
           KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 590 NGGTIEDKVKWATXHLEKPI 649
           NGG++ DKV+WA  H EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203



 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = +1

Query: 739 GTQRXYPVKTHXGLXKVACIGAWHPSRVSFTVXRA 843
           GT+R  P KTH GL KVACIGAWHP+ V +TV RA
Sbjct: 234 GTKRL-PRKTHRGLRKVACIGAWHPANVQWTVARA 267



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 660 SVFAQDEMIDCIXXXXXXXXXXXXSRWHTKXLPR 761
           S F Q+EMID I            +RW TK LPR
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 211 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMNGVLKIF 44
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P N V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 38  RTENFQHP--VHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
           ++E  QHP  V  +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +2

Query: 8   ILVXDCLPACRTENFQHPVHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 184
           IL  +  P C      H  + S   +P     +  G  K FP D+P S P+  +   G  
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343

Query: 185 AGMTHVVREPDRPGSKI 235
              T  ++ P++   +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 503 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 613
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,582
Number of Sequences: 5004
Number of extensions: 69646
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)