Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_E03
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 29 0.80
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 29 1.1
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 28 1.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.9
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.3
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 4.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.7
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 7.5
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 26 7.5
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 26 7.5
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 7.5
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 26 7.5
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz... 26 7.5
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 9.9
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.80
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 221 SMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWN-NRWFPVKMTPERERVVAXESSKKXW 45
S+P SS LK S+ +S G + +R F +K TP + ++ ES K W
Sbjct: 288 SLPLSSLWASSTALKLQSMKTSSAQGETTEVSIRVDRTFDIKHTPSDDYSISDESETKKW 347
Query: 44 T 42
T
Sbjct: 348 T 348
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 329 LNSIQLISGLLASTSAKP----LPANDTSDIIFFAPELFDLQSSAIPRLDTHHLPETRRP 496
+N+ S L A + AKP + +S + + E F LQ + RL H P T R
Sbjct: 101 VNTFYNDSILSAKSKAKPELLRTLTSKSSSAVDWLSERFGLQMDQLSRLAGHSEPRTHRG 160
Query: 497 LHFDIP 514
H D P
Sbjct: 161 THPDYP 166
>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 112
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 554 PTDTSIEPVYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVD 694
PT TS PVY G ++A +PR +R E ++FP D
Sbjct: 4 PTTTSYSPVYTGNPLYDISASQSDPRQRIRKNVRFQTEV-DEFPDFD 49
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 624 NPGTPTPLKSATMGSSPINF 683
+PGTPT LKS ++ SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 353 GLLASTSAKPLPANDTSDIIFFAPELFDLQSSAIP 457
G +S + P+P+N++SD++F P + ++P
Sbjct: 803 GSSSSLTVIPMPSNESSDLVFSIPGITSWLDPSLP 837
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 54 LATLXRHNSFPFWSHFYGKPSIVPIK 131
LATL R N FW F+G P+I +K
Sbjct: 215 LATLIRSNGI-FWCIFFGMPAIGTLK 239
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 596 YKTVAALMMEPRDPDSLEIRHNGEFSNQF 682
++ VA+ + E P LEIR EFS F
Sbjct: 161 FQRVASALYEESSPLELEIRSESEFSKMF 189
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 4.3
Identities = 22/92 (23%), Positives = 35/92 (38%)
Frame = +2
Query: 371 SAKPLPANDTSDIIFFAPELFDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDIXSV 550
S +P D S + F P L + +P P T IP+ PT + +
Sbjct: 359 SPSMMPPYDRSSVYFQQP----LSRTDVPNQSFQQYPTTVDGGSM-IPNLYPTSAEQMGL 413
Query: 551 EPTDTSIEPVYPGCDYKTVAALMMEPRDPDSL 646
P D+ + YP ++ + EP DS+
Sbjct: 414 YPQDSQNKDTYPKSLVNRPSSAVCEPARNDSI 445
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -3
Query: 819 GRKEGRKRSLLAMEAESK-VGSYFESCLGAITLRVWAPXS*GRSTHGN*LENSP 661
G G +L + S GSY S GA AP S R N L N P
Sbjct: 106 GNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPP 159
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 512 EYRNGEDDGFLEDDECQVSGWLRTGGQKVQV 420
E +NG+ +G ++D E + W R +K+QV
Sbjct: 67 EVKNGKSNGIIQDWESTLYTWERGLKEKLQV 97
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 565 GVCRFNTXNVHFGRERGRNIEME 497
G R+ + N H GRE+ R ++E
Sbjct: 183 GTARYMSINTHLGREQSRRDDLE 205
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 565 GVCRFNTXNVHFGRERGRNIEME 497
G R+ + N H GRE+ R ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 31 NVASVHXFLLLSXATTRSRSG--VIFTGNHRLFQSRPGTAPLFEAM-LNDQPFNFL 189
N + FL A S+ G V+ TGNHR+ + RP PL +A+ N N+L
Sbjct: 487 NAGTAARFLTGIAALVSSKDGAKVVLTGNHRM-KVRP-IGPLVDALRANGCEINYL 540
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 565 GVCRFNTXNVHFGRERGRNIEME 497
G R+ + N H GRE+ R ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202
>SPAC1610.02c |||mitochondrial ribosomal protein subunit
L1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 30 QCGFCPRFLATLXRHNSFP 86
Q GFC RF++ L + ++FP
Sbjct: 25 QKGFCKRFISQLNKKSNFP 43
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 235 PIKERKTILRGGSYDFSAYRSYQKRHHRMTNFKFDPAHIRAP 360
P+ ER T+ ++A S QKR+ R+T D AH +P
Sbjct: 170 PLLERNTL-------YAAKASIQKRYERLTKRGVDQAHESSP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,809,865
Number of Sequences: 5004
Number of extensions: 87137
Number of successful extensions: 284
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -