Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_E03
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 31 1.1
11_06_0092 + 19973364-19975983,19976272-19976648 30 2.0
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 30 2.6
05_06_0147 + 25986259-25987701 30 2.6
09_02_0476 + 9728729-9730739,9730930-9730991 29 4.5
05_05_0200 - 23171803-23171906,23172304-23173951 29 4.5
07_03_0507 - 18871260-18871361,18871444-18871560,18871792-188721... 29 6.0
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 29 6.0
05_06_0141 - 25964706-25965473 28 7.9
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 263 RRMVFRSLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWNNRWFPVKMTPER 84
RRM S + + SM PS+F + LR+ G S S+ ++ + + VKMT +
Sbjct: 967 RRMSAESNMSYYLRSMTPSAFESALRQKDGELASYTSRLASLESIRNSLAEELVKMTEQC 1026
Query: 83 ERVVAXESSKKXWTEATLESTK 18
E+ + E+S A LE+ K
Sbjct: 1027 EK-LRTEASALPGLRAELEALK 1047
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 245 SLIGDVMSSMPPSSFANVLRKLKGWSLSIASKSGAVPGLDWN 120
+L + +S PSSF LR+L SL+ + SGA+P WN
Sbjct: 180 ALAENTLSGSIPSSFGQ-LRRLSFLSLAFNNLSGAIPDPIWN 220
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 580 LSRLRLQNCGSSNDGTPGPRLP*NPPQWGVLQSISMGRS 696
+ LR + SS+ + PR P +PP W L+S+ + S
Sbjct: 1 MKALRRSSTSSSSSASSSPRAPSSPPPWVQLRSLLVASS 39
>05_06_0147 + 25986259-25987701
Length = 480
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 359 LASTSAKPLPANDTSDIIFFAPELFDLQSSAIPRLDTHHLPETRRP 496
LA A P P T+D + D ++A P + HHLP P
Sbjct: 35 LAVVIAVPTPPASTADFFSSSAPAVDRMAAANPSISFHHLPPPEYP 80
>09_02_0476 + 9728729-9730739,9730930-9730991
Length = 690
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 8 LPKSSSTPMWLLSTXSCYSRSPQLVPVLE 94
LP+S+++P W + S S SPQL P+++
Sbjct: 21 LPRSAASPSWSDAAVSPPSPSPQLCPMMQ 49
>05_05_0200 - 23171803-23171906,23172304-23173951
Length = 583
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 167 MTNPSTSSTHLQMNLEAWNSLHHRSKNERPFFVAGLMTF 283
+T P+TS T L+ S R RP +V GLM F
Sbjct: 294 LTRPATSRTSLEKRYSFIQSEERRFVESRPEWVGGLMDF 332
>07_03_0507 -
18871260-18871361,18871444-18871560,18871792-18872120,
18872704-18872871,18873592-18873685,18873707-18873766,
18874702-18874762,18875258-18875319,18875729-18875856,
18876783-18876852,18877472-18877630
Length = 449
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 413 FFAPELFDLQSSAIPRLDTHHLPETRRPLH 502
F P LF + S +P++ T+ + +TR+PLH
Sbjct: 284 FLRPLLFLMYSFWVPQIVTNVIRDTRKPLH 313
>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = +2
Query: 8 LPKSSSTPMWLLSTXSCYSRSPQLVPVLESFLRETIDCSNQGLVRRHSLRLCSMTNPSTS 187
L KS S P+ LST SC P L V + ++ Q + +R + + S+ +
Sbjct: 1202 LEKSLSDPLLQLSTTSC---KPDLKVVGHARNMSSLGLEGQSIYQRRAAKFSSVHSDIHV 1258
Query: 188 STHLQMNLEAWNSLHHRSKNERPFFVAGLMTFQPTEATK 304
+++ + S H RS++ P G+M+ P + +
Sbjct: 1259 RSYISCPVSPCGSPHLRSRS--PQHQNGIMSPSPISSPR 1295
>05_06_0141 - 25964706-25965473
Length = 255
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 9 CPNLRRLQCGFCPRFLATLXRHNSFPFWSH 98
CP+ RR CPR H +F W H
Sbjct: 104 CPDFRRRPGAACPRGSTCPFAHGTFELWLH 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,026,347
Number of Sequences: 37544
Number of extensions: 627951
Number of successful extensions: 1646
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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