Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_E03
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 4.1
L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 29 5.4
AC006633-5|AAO21429.1| 506|Caenorhabditis elegans Prion-like-(q... 28 7.1
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 28 7.1
Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z35640-5|CAO82046.1| 689|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z35640-4|CAA84704.1| 707|Caenorhabditis elegans Hypothetical pr... 28 9.4
AL132948-39|CAI79178.1| 380|Caenorhabditis elegans Hypothetical... 28 9.4
AL132948-38|CAD31811.1| 378|Caenorhabditis elegans Hypothetical... 28 9.4
>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical protein
F54G8.3 protein.
Length = 1139
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 511 NIEMERTTGFWKMMSVKSRDG*GLEVKKFRCE 416
NI T FW + ++K DG EVK C+
Sbjct: 963 NIPWFSTANFWNLFAIKGGDGRPREVKHLSCQ 994
>L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical
protein C06G4.1 protein.
Length = 886
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 85 RSGVIFTGNHRLFQSR-PGTAPLFEAMLNDQPFNFLNTFANEL 210
RSG+I + RL R G P+F +N+Q N N + N +
Sbjct: 255 RSGMIMASSERLEDPRFSGRLPVFARQINNQEINNDNFYQNSI 297
>AC006633-5|AAO21429.1| 506|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform b protein.
Length = 506
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 627 PGTPTPLKSATMGSSPINFHGSISLMXMAPKPSAL*HPNMTRNMTRLYFRPP 782
P TP P+++ +G SP F + ++ + +A RN R+Y PP
Sbjct: 291 PVTPEPVETPRIGPSPRRFVPASAIPDLRAANAAARSSMHNRNRPRMYNPPP 342
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 627 PGTPTPLKSATMGSSPINFHGSISLMXMAPKPSAL*HPNMTRNMTRLYFRPP 782
P TP P+++ +G SP F + ++ + +A RN R+Y PP
Sbjct: 291 PVTPEPVETPRIGPSPRRFVPASAIPDLRAANAAARSSMHNRNRPRMYNPPP 342
>Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical
protein Y41E3.18 protein.
Length = 510
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +3
Query: 36 GFCPRFLATLXRHNSFPFWSHFYGKPSIVPIKAWYGATL*GY 161
GF PRF N H G PS++ I +Y + Y
Sbjct: 264 GFAPRFTLLYSHPNGSDLSDHLIGIPSLIDIARFYRCEVYSY 305
>Z35640-5|CAO82046.1| 689|Caenorhabditis elegans Hypothetical
protein F43D9.3b protein.
Length = 689
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 447 EDWRSKSSGAKNIMSEVSLAGSGLADVEARSPDMSWIEFKIGHPVMS 307
+D+RSK K I + L+G A EA + ++ K+G VMS
Sbjct: 358 DDYRSKEDDIKKIKQALGLSGESEAADEALTNVLADTTAKLGSTVMS 404
>Z35640-4|CAA84704.1| 707|Caenorhabditis elegans Hypothetical
protein F43D9.3a protein.
Length = 707
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 447 EDWRSKSSGAKNIMSEVSLAGSGLADVEARSPDMSWIEFKIGHPVMS 307
+D+RSK K I + L+G A EA + ++ K+G VMS
Sbjct: 358 DDYRSKEDDIKKIKQALGLSGESEAADEALTNVLADTTAKLGSTVMS 404
>AL132948-39|CAI79178.1| 380|Caenorhabditis elegans Hypothetical
protein Y39B6A.12b protein.
Length = 380
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 296 ATKKDITG*PILNSIQLISGLLASTSAKPLPANDTSDIIFFAPELFDLQSSAI 454
A ++ +T P LNS + +L++ PLP++ + AP++ + SSA+
Sbjct: 246 ADEQKLTENPALNSGKFSLSILSAIRRPPLPSSTATSSSAAAPQIPAMTSSAV 298
>AL132948-38|CAD31811.1| 378|Caenorhabditis elegans Hypothetical
protein Y39B6A.12a protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 296 ATKKDITG*PILNSIQLISGLLASTSAKPLPANDTSDIIFFAPELFDLQSSAI 454
A ++ +T P LNS + +L++ PLP++ + AP++ + SSA+
Sbjct: 244 ADEQKLTENPALNSGKFSLSILSAIRRPPLPSSTATSSSAAAPQIPAMTSSAV 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,224,613
Number of Sequences: 27780
Number of extensions: 500734
Number of successful extensions: 1433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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