Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_D24
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 30 2.1
07_03_1747 + 29188568-29188715,29188793-29189541 29 3.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.6
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209... 28 8.4
09_02_0226 - 6007656-6008063,6012166-6012678 28 8.4
08_02_0813 + 21459776-21461128 28 8.4
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.4
03_02_0111 + 5688649-5688942 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 28 8.4
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.4
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 67 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 246
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 247 LDRQTTXLERRGSGAAALGW 306
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 361 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSV 507
PPP TT++ V L TA + S + QF+C+ TTC + S S+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESL 258
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 392 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSXSVVCRSNS 243
T + S GGCS + PP AFRG+ + P+ V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>10_08_1059 +
22618999-22619206,22620386-22620416,22620440-22620974,
22621065-22621319
Length = 342
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = -2
Query: 748 PEEQGARAPTGTGXRPPXACARGXXPGXTXGTXPRXGFHXATVXGLHR 605
P G + PTG RP PG G P H + HR
Sbjct: 6 PTAAGRQPPTGAVPRPTGPTHYSHPPGSCSGCRPASPLHLPSAESAHR 53
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 344 QYHVRPPQAFRGHQPSAAAPLPLRSXSVVCRSN 246
QY R P++ RG QP+A LP + CR+N
Sbjct: 180 QYR-RGPESLRGTQPAAMLRLPCFCCAAGCRNN 211
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 276 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 455
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 456 QL 461
+L
Sbjct: 289 EL 290
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 40 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 180
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 262 TXLERRGSGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 435
T L + AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 390 GRGERSPRRWLQPRLAVPRQASTSVPRTP 304
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 762 RQRPXRKSREPEHPREXAPGR 700
R + +K+R+P++PR APGR
Sbjct: 44 RPKTLKKARDPKYPRVSAPGR 64
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 273 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 452
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 453 MQLDN 467
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,230,473
Number of Sequences: 37544
Number of extensions: 489556
Number of successful extensions: 1501
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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