Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D22
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    30   0.38 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.87 
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   3.5  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   6.1  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   8.1  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 61  YYSCYPFLLTCAIASAAECENATSLSLMIDSLLATYG 171
           +YSC P+LL   I  A+ C+  +  S +ID  L T+G
Sbjct: 101 FYSCNPYLLFKGIC-ASSCQIDSYQSSLIDDALETFG 136


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 244 VRVHRADTGRSSDELDRQTTXLERRGMGL-QHLAG 345
           +R H+   GR+  ELDR+ T L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 149 TRSSQRTVGSLPPHSKIVVNLTLHLRHANI 238
           T S+Q  V S+  H+K+ +NLTL+L  +++
Sbjct: 463 TLSAQIAVQSVSSHAKLGMNLTLYLTFSSV 492


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 167 YVARSESIMRDSDVAFSHSAALAIAQVRRNG 75
           Y    ES + D+ +  SH+ A +I Q  R+G
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSG 93


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 322 FPCVPXQSFVDPIHLKICQYPHGG 251
           F  +P Q+F    H+++C YP GG
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGG 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,985
Number of Sequences: 5004
Number of extensions: 51728
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)