Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_D22
(880 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 39 5e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 39 7e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 38 9e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 37 3e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 36 5e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 30 0.024
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.30
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.9 bits (89), Expect = 3e-05
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 146 STRSSQRTVGSLPPHSKIVVNLTLHLRHANIRESGSTVRILADLQMNWIDKRLXWNAGEW 325
S + +R V + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 326 -GCSTWLVSSERLWRPDVVLLN 388
G ++ +LW+PD+++ N
Sbjct: 124 GGVKDLRITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.9 bits (89), Expect = 3e-05
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 146 STRSSQRTVGSLPPHSKIVVNLTLHLRHANIRESGSTVRILADLQMNWIDKRLXWNAGEW 325
S + +R V + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 326 -GCSTWLVSSERLWRPDVVLLN 388
G ++ +LW+PD+++ N
Sbjct: 124 GGVKDLRITPNKLWKPDILMYN 145
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 NIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLN 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 NIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLN 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 NIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLN 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 NIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLN 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 NIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLN 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 NIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLN 388
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.5 bits (88), Expect = 4e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 164 RTVGSLPPHSKIVVNLTL-HLRHANIRESGSTVRILADLQMNWIDKRLXWNAGEWG-CST 337
R VG+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 338 WLVSSERLWRPDVVLLN 388
V SE +W PD+VL N
Sbjct: 95 LHVPSEHIWLPDIVLYN 111
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.1 bits (87), Expect = 5e-05
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLN 388
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 39.1 bits (87), Expect = 5e-05
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 197 IVVNLTLHLRHA---NIRESGSTVRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLW 364
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 365 RPDVVLLN 388
PD+VL N
Sbjct: 104 LPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.7 bits (86), Expect = 7e-05
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLN 388
++ +W D +L W E+G L V S+ +WRPD+VL N
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.7 bits (86), Expect = 7e-05
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLN 388
++ +W D +L W E+G L V S+ +WRPD+VL N
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 38.3 bits (85), Expect = 9e-05
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 275 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLN 388
++ W D +L WN E+G L V SE +W PD+VL N
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 197 IVVNLTLHLRHANIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPD 373
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 374 VVLLN 388
+L N
Sbjct: 92 TILYN 96
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.1 bits (82), Expect = 2e-04
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 194 KIVVNLTL-HLRHANIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWR 367
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 368 PDVVLLN 388
PD+VL N
Sbjct: 111 PDIVLFN 117
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.7 bits (81), Expect = 3e-04
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 203 VNLTLHLRHANIRESGSTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVV 379
++ L ++H N+ E TV L++ W L W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 380 L 382
+
Sbjct: 122 M 122
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 161 QRTVGSLPPHSKIVVNLTLHLRHANIRESGSTVRILADLQMNWIDKRLXWNAGEWGCSTW 340
+R VG+ + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 341 L-VSSERLWRPDVVLLN 388
L + RLW+PDV++ N
Sbjct: 98 LRIPPHRLWKPDVLMYN 114
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 30.3 bits (65), Expect = 0.024
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 236 IRESGSTVRILADLQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLN 388
I E T + + +W+D+RL + G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 26.2 bits (55), Expect = 0.40
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 466 RLDIXTPISMHLDNWPNDMQTCTFKF 543
RL I M+L+N+P D Q C +F
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQF 148
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 26.6 bits (56), Expect = 0.30
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +2
Query: 179 LPPHSK---IVVNLTLHLRHAN-IRESGSTVRILADLQMNWIDKRLXWNAGEWGCSTWLV 346
LP H K VV + +R + E + + +W D RL + S +
Sbjct: 53 LPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIK 112
Query: 347 SSERLWRPDVVLLN 388
ER+WRPD N
Sbjct: 113 MLERIWRPDTYFYN 126
Score = 23.0 bits (47), Expect = 3.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 466 RLDIXTPISMHLDNWPNDMQTC 531
RL I M L N+P D Q+C
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSC 176
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,345
Number of Sequences: 438
Number of extensions: 4644
Number of successful extensions: 46
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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