Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_D20
(905 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 52 5e-09
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 52 7e-09
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 52 1e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 50 2e-08
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 50 2e-08
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 50 2e-08
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 50 3e-08
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 3e-08
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 49 5e-08
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 49 5e-08
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 49 7e-08
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 48 1e-07
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 48 2e-07
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 48 2e-07
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 47 2e-07
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 46 5e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 46 6e-07
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 43 4e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 27 0.31
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 5.1
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 52.4 bits (120), Expect = 5e-09
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWR 347
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 348 PDVVLL-NAAATTAGDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
PD+VL NA A +A + + V W + + ++ +P D TC KFG
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFG 172
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 52.0 bits (119), Expect = 7e-09
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +3
Query: 255 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNXS 428
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 429 VSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
V W + + ++ +P D TC KFG
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFG 168
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 51.6 bits (118), Expect = 1e-08
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWR 347
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 348 PDVVLLNAAATTAGDYALRAR----VSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTF 515
PD+VL N A G+Y +R + + N V W+ + ++ + +P D TC
Sbjct: 111 PDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167
Query: 516 KFG 524
KFG
Sbjct: 168 KFG 170
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 50.4 bits (115), Expect = 2e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V++N S ++ + + + +P D C KFG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFG 198
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 50.4 bits (115), Expect = 2e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V++N S ++ + + + +P D C KFG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFG 198
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 50.4 bits (115), Expect = 2e-08
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Frame = +3
Query: 174 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWR 347
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 348 PDVVLLNAAATTAGDYAL----RARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTF 515
PD+VL N A G+Y + +A V + V W + S+ ++ +P D+ TC
Sbjct: 113 PDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVL 169
Query: 516 KFG 524
K G
Sbjct: 170 KLG 172
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 50.0 bits (114), Expect = 3e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V++N S ++ + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFG 130
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 50.0 bits (114), Expect = 3e-08
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Frame = +3
Query: 177 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLW 344
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 345 RPDVVLLNAAATTAGDYAL-RARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKF 521
PD+VL N A G + +A + V W + + + +P D TC KF
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKF 163
Query: 522 G 524
G
Sbjct: 164 G 164
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 49.2 bits (112), Expect = 5e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V+++ S ++ + M + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFG 130
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 49.2 bits (112), Expect = 5e-08
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = +3
Query: 255 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSN 419
++ W D +L WN E+G L V SE +W PD+VL N A G+Y + +A +
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKY 142
Query: 420 NXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
VSW + + ++ +P D +C KFG
Sbjct: 143 TGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFG 177
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 48.8 bits (111), Expect = 7e-08
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V+++ S ++ + M + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFG 130
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 48.0 bits (109), Expect = 1e-07
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V+++ S ++ + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFG 130
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 48.0 bits (109), Expect = 1e-07
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = +3
Query: 144 RTIGSLPPHSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CST 317
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 318 WLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNXSVSWIKRLDIXTPISMQLDN 485
V SE +W PD+VL N A G+Y + +A + + V W + + ++
Sbjct: 95 LHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEY 151
Query: 486 WPNDLHTCTFKFG 524
+P D TC KFG
Sbjct: 152 FPFDEQTCFMKFG 164
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 47.6 bits (108), Expect = 2e-07
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V+++ S ++ + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFG 130
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 47.6 bits (108), Expect = 2e-07
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 213 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 386
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
G Y V+++ S ++ + + + +P D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFG 130
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 47.2 bits (107), Expect = 2e-07
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +3
Query: 255 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNXS 428
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V NN +
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Query: 429 VSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
++ + + + +P D C KFG
Sbjct: 136 CLYVPPGIFKSTCKIDITWFPFDDQRCEMKFG 167
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Frame = +3
Query: 177 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPD 353
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 354 VVLLNAAATTAGDYALRAR--VSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKF 521
+L N A + VS+ V W+ + + ++ +P D C K+
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKW 149
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 45.6 bits (103), Expect = 6e-07
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = +3
Query: 216 IRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLNAAAT---TA 386
I E + T + + +W+D+RL + G+ + + R+W+PD N + T
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 387 GDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTFKFG 524
R+ + V + RL I M L+N+P D C +FG
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFG 149
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 45.2 bits (102), Expect = 8e-07
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Frame = +3
Query: 174 KIVVNLTLHL--RHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLW 344
+I N+T+ L + + S + + + + + W D L W ++ G + V S+ +W
Sbjct: 66 QIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIW 125
Query: 345 RPDVVLLNAAATT---AGDYALRARVSNNXSVSWIKRLDIXTPISMQLDNWPNDLHTCTF 515
PD+ + N+ T G V ++ SVS + + + +WP D H C
Sbjct: 126 VPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRI 185
Query: 516 KFG 524
FG
Sbjct: 186 NFG 188
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 42.7 bits (96), Expect = 4e-06
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 7/133 (5%)
Frame = +3
Query: 159 LPPHSK---IVVNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLXWNAGEWGCSTWLV 326
LP H K VV + +R + E + + + +W D RL + S +
Sbjct: 53 LPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIK 112
Query: 327 SSERLWRPDVVLLNAAATTAGDYALR---ARVSNNXSVSWIKRLDIXTPISMQLDNWPND 497
ER+WRPD N + + R+S + + + RL I M+L N+P D
Sbjct: 113 MLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMD 172
Query: 498 LHTCTFKFGF*RC 536
+C G +C
Sbjct: 173 RQSCPLILGSCKC 185
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 39.1 bits (87), Expect = 5e-05
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Frame = +3
Query: 183 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVV 359
++ L ++H N+ E TV L++ W L W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 360 L--LNAAATTAGDYALRARVSNNXSVSWIKRLDIXTPISMQLDN--WPNDLHTCT 512
+ + + ++ V N+ ++ + TP+ + D+ WP D+ CT
Sbjct: 122 MHSVTSVGIDLEMPSVECIVFNSGTILCVP-FTTYTPV-CEYDHTWWPYDILNCT 174
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 26.6 bits (56), Expect = 0.31
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +3
Query: 333 ERLWRPDVVLLNAAATTAGDYALRARVSN-----NXSVSWIKRLDIXTPISMQLDNWPND 497
+ LW+PD LNA + AL + S+ N +V + R+ M+ +P D
Sbjct: 69 DSLWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMD 126
Query: 498 LHTC 509
+ C
Sbjct: 127 IQIC 130
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.6 bits (46), Expect = 5.1
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 333 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNXSVSWIKRLDIXTPISMQLDNWPNDLH 503
+ +WRPD NA + T + + + ++ ++ +L + +M +P+D
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 504 TC 509
C
Sbjct: 176 EC 177
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,755
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 50
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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