Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D19
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...   190   2e-49
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...   167   2e-42

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score =  190 bits (463), Expect = 2e-49
 Identities = 86/151 (56%), Positives = 109/151 (72%)
 Frame = +1

Query: 133 YIVQERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVXVPXWTNAKMEISL 312
           Y  +E G+  T DY+V+ +  G PIS  HDIPL+A+  + ++NMVV +P WT AK+EI+ 
Sbjct: 4   YTTREVGALNTLDYQVYVEKNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEITK 63

Query: 313 GEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGARGDNDPVDV 492
              LNPIKQD KKG LRFV N FPH GYIWNYGA PQT+E+PN V P+T A+GD+DP+DV
Sbjct: 64  EATLNPIKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVVHPETKAKGDSDPLDV 123

Query: 493 IEIGERVXSRGDVYPVKILGTLALIDEGXTE 585
            EIGE     G V  VK+LG +AL+DEG T+
Sbjct: 124 CEIGEARGYTGQVKQVKVLGVMALLDEGETD 154


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score =  167 bits (405), Expect = 2e-42
 Identities = 79/160 (49%), Positives = 102/160 (63%)
 Frame = +1

Query: 106 ATLKTQVRMYIVQERGSPYTPDYRVFFKDEGGPISPMHDIPLWADKAQRLVNMVVXVPXW 285
           A+L   +  +  +  G   TPD+RV+      PIS  HD+PL +DK     NMV  +P W
Sbjct: 2   ASLAKNILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDKDT--FNMVTEIPRW 59

Query: 286 TNAKMEISLGEALNPIKQDVKKGNLRFVNNVFPHRGYIWNYGALPQTWENPNHVDPDTGA 465
           T AK EISL    +PIKQD+K G LR+V N FP+ G+IWNYGALPQTWE+PN +D  T  
Sbjct: 60  TQAKCEISLTSPFHPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWEDPNVIDSRTKM 119

Query: 466 RGDNDPVDVIEIGERVXSRGDVYPVKILGTLALIDEGXTE 585
           +GD DP+DV EIG  +   G +  VK+LG L LID+G T+
Sbjct: 120 KGDGDPLDVCEIGGSIGYIGQIKQVKVLGALGLIDQGETD 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,958
Number of Sequences: 5004
Number of extensions: 47894
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)