Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D19
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.38 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.67 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +1

Query: 316 EAL-NPIKQDVKKGNLRFVNNVFPHR-----GY-IWNYGALPQT-WENPN 441
           EAL N IK    KGN+R    +FP R      Y +WN+  +    ++NP+
Sbjct: 151 EALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLISYAGYKNPD 200


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/56 (19%), Positives = 24/56 (42%)
 Frame = +3

Query: 207  IAHARHSTMGRQSSTPRQHGSXSTXMDQCENGDQPRGGPQSYQAGRKERQPSVREQ 374
            + H+   T  +Q    +Q         Q +   Q +  PQ  Q  ++++QP  +++
Sbjct: 1493 VDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK 1548


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 8   FVAAAVPGLPVDSKTIVRC 64
           F  +  PG P+DSK   +C
Sbjct: 530 FSGSCAPGAPLDSKLCQQC 548


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 8   FVAAAVPGLPVDSKTIVRC 64
           F  +  PG P+DSK   +C
Sbjct: 530 FSGSCAPGAPLDSKLCQQC 548


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 8   FVAAAVPGLPVDSKTIVRC 64
           F  +  PG P+DSK   +C
Sbjct: 530 FSGSCAPGAPLDSKLCQQC 548


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +1

Query: 409 GALPQTWENPNHVDPDTGARGDNDPVDVIEIGERVXSRG---DVYPVK 543
           GA+    E    VD D    GD+D  D +E      + G   DV+ V+
Sbjct: 377 GAMNANGEAVGEVDEDDDDDGDDDDDDDVEAANGKPAEGMLTDVFHVQ 424


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/47 (21%), Positives = 20/47 (42%)
 Frame = +3

Query: 237 RQSSTPRQHGSXSTXMDQCENGDQPRGGPQSYQAGRKERQPSVREQR 377
           +Q    +QH           N  QP+   Q  Q  ++++Q   ++Q+
Sbjct: 416 QQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,582
Number of Sequences: 438
Number of extensions: 3599
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)