Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_D16
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical p... 31 1.0
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 30 1.8
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 30 1.8
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 30 1.8
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 30 1.8
AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical... 29 3.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 4.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 4.1
AC024746-14|AAF60406.1| 227|Caenorhabditis elegans Hypothetical... 29 4.1
AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical... 29 4.1
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 28 9.5
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 28 9.5
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 28 9.5
AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical ... 28 9.5
>Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 601 VSSLQPLQWWHFGVGSLRATRCR*RPK-QPCPVSTCVARKVRR 476
+ S P QW H + LRA R + K QP +++CVA +++R
Sbjct: 364 MQSSGPKQWVHEELAELRAVTFRFKDKEQPMAMASCVAARLQR 406
>Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 601 VSSLQPLQWWHFGVGSLRATRCR*RPK-QPCPVSTCVARKVRR 476
+ S P QW H + LRA R + K QP +++CVA +++R
Sbjct: 364 MQSSGPKQWVHEELAELRAVTFRFKDKEQPMAMASCVAARLQR 406
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Frame = -3
Query: 512 SREHLRRSEGETSSVAIHPVREDRADRLD--GPSPVGGVRQAARPRPEHGTPRLKLPRS- 342
S++ ++ + + SS + ++R +R PSP R + +PR +PR + PRS
Sbjct: 126 SKKDKKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSP 185
Query: 341 ----NFHRARTRLPPGAEIASPRVIRSERLRFQVPGRRPSR 231
R +R P + SPR R + + R+PSR
Sbjct: 186 KRSREESRKLSRKPSSSRSKSPRRSREDPRKV---ARKPSR 223
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Frame = -3
Query: 512 SREHLRRSEGETSSVAIHPVREDRADRLD--GPSPVGGVRQAARPRPEHGTPRLKLPRS- 342
S++ ++ + + SS + ++R +R PSP R + +PR +PR + PRS
Sbjct: 126 SKKDKKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSP 185
Query: 341 ----NFHRARTRLPPGAEIASPRVIRSERLRFQVPGRRPSR 231
R +R P + SPR R + + R+PSR
Sbjct: 186 KRSREESRKLSRKPSSSRSKSPRRSREDPRKV---ARKPSR 223
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 508 VSTCVARKVRRPRSRFTQSERTGRIASTVRRP*AGSARRRDHAPSTARRD*SFRARTSTA 329
+ VA + F+ +++ ++ RP A A++ HAPS + FRA T A
Sbjct: 370 IDQLVAELELNTENTFSPADKRRSFPTSFGRPQAHQAQQH-HAPSDYEKPNRFRAETRHA 428
Query: 328 PGRG 317
P RG
Sbjct: 429 PTRG 432
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 508 VSTCVARKVRRPRSRFTQSERTGRIASTVRRP*AGSARRRDHAPSTARRD*SFRARTSTA 329
+ VA + F+ +++ ++ RP A A++ HAPS + FRA T A
Sbjct: 398 IDQLVAELELNTENTFSPADKRRSFPTSFGRPQAHQAQQH-HAPSDYEKPNRFRAETRHA 456
Query: 328 PGRG 317
P RG
Sbjct: 457 PTRG 460
>AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical
protein Y46G5A.29 protein.
Length = 770
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 600 TAEHTL-AYXPAFAEQRRVLVAKIGPDLSLPTVVATMLGSDESXQAMLDFCEFTISXXXA 776
T+E L + P F EQR +L AK+ LP VA++ + E+ + DF T
Sbjct: 222 TSEPVLPSQHPLFEEQREILKAKM--VTPLPVTVASLAETSENSDDVFDFDGLTFESPAT 279
Query: 777 AER 785
A +
Sbjct: 280 ANK 282
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = -3
Query: 512 SREHLRRSEGETSSVAIHPVREDRADRLDGPSPVGGVRQAARPRPEHGTPRLKLPRSNFH 333
SR+ R+ + + + RE R+ R SP R+ R R PR +
Sbjct: 71 SRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDR 130
Query: 332 RARTRLPPGAEIASPRVIR 276
R R R PP SP+ ++
Sbjct: 131 RRRERSPPSMVPNSPQRVK 149
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = -3
Query: 512 SREHLRRSEGETSSVAIHPVREDRADRLDGPSPVGGVRQAARPRPEHGTPRLKLPRSNFH 333
SR+ R+ + + + RE R+ R SP R+ R R PR +
Sbjct: 71 SRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRSGGDR 130
Query: 332 RARTRLPPGAEIASPRVIR 276
R R R PP SP+ ++
Sbjct: 131 RRRERSPPSMVPNSPQRVK 149
>AC024746-14|AAF60406.1| 227|Caenorhabditis elegans Hypothetical
protein Y110A2AL.12b protein.
Length = 227
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +3
Query: 381 AWSRRLADPAYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVA--RR 554
AW + G + P LSD +NR L F + VLT G L L+A R
Sbjct: 152 AWCSSFPQFSNGEDPYSVVSPCLSDSINR-HSLLFFLVSNVLT--GLVNSRLMLIASLRT 208
Query: 555 EPTPKCHHCSGC 590
P+P H S C
Sbjct: 209 LPSPFSWHMSLC 220
>AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical
protein Y110A2AL.12a protein.
Length = 480
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +3
Query: 381 AWSRRLADPAYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVA--RR 554
AW + G + P LSD +NR L F + VLT G L L+A R
Sbjct: 405 AWCSSFPQFSNGEDPYSVVSPCLSDSINR-HSLLFFLVSNVLT--GLVNSRLMLIASLRT 461
Query: 555 EPTPKCHHCSGC 590
P+P H S C
Sbjct: 462 LPSPFSWHMSLC 473
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 685 SDKSGPIFATRTRRCSAKAGQYASVCSAVS 596
S K GP TRTR C GQ A+ C S
Sbjct: 664 SSKCGPGQRTRTRGCLGPNGQEATTCQGPS 693
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 648 GAAPRKRXSTRACAPPCPRCSHCSGGTSASAPSGRRGAGSDRN 520
GAAP +A AP + +GG A+AP+G AG +N
Sbjct: 175 GAAPA--GGYQASAPAAVEAAPAAGGYQAAAPAGGAYAGHKKN 215
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 648 GAAPRKRXSTRACAPPCPRCSHCSGGTSASAPSGRRGAGSDRN 520
GAAP +A AP + +GG A+AP+G AG +N
Sbjct: 191 GAAPA--GGYQASAPAAVEAAPAAGGYQAAAPAGGAYAGHKKN 231
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 509 REHLRRSEGETSSVAIHPVRED-RADRLDGPSPVGGV-RQAARPRPEHGTPRLKLPRSNF 336
R+ RRS +SS + PVRE R PSP + R+A+R R +P LP +
Sbjct: 111 RKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREASRSR----SP---LPAKDR 163
Query: 335 HRARTRLPP 309
R R+ PP
Sbjct: 164 SRTRSGSPP 172
>AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical
protein F54A3.4 protein.
Length = 755
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 485 GETSSVAIHPVREDRADRLDGPSPVGGVRQAARPRPEHGTPRLKLPRSNFHRAR 324
G +S+V+ V + RL +P G Q GT ++LP SNF AR
Sbjct: 78 GGSSAVSYATVAAVKGVRLTAHAPPGAFDQVRTILSTLGTKIVELPVSNFREAR 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,454,513
Number of Sequences: 27780
Number of extensions: 348087
Number of successful extensions: 1333
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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