Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D13
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.9  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 438 KEVPAKTPMAGQHXRQPE--GEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQ 274
           + +P+K P  GQH RQ     + +    H +R++ T     TE G+  RQ + P  Q
Sbjct: 678 ESIPSKQPTEGQHARQESLPSQQTTETKH-LRKESTPSKQPTE-GQHTRQESLPSQQ 732


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 267 PPRVEPPRSNYTFXGAPFPPRAEVATPP 184
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 19   CHALTRENVAALRRPQRAIAVRAIRG 96
            C  LT EN++A  R Q   AVR + G
Sbjct: 1017 CKLLTHENISASHRQQLQSAVRNVLG 1042



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
 Frame = -1

Query: 390 PEGEASAVAAH--PVREDRTDRLDGTEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 232
           P   AS + ++  PV E      +   +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 231 FXGAPFPPRAEVATPPVIGS 172
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,999
Number of Sequences: 5004
Number of extensions: 30226
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)