Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_D13
(849 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 32 0.59
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 32 0.59
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 32 0.59
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 32 0.59
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 32 0.59
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 32 0.59
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 32 0.59
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 30 2.4
AF100305-6|AAC68915.1| 352|Caenorhabditis elegans Hypothetical ... 29 4.2
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 28 7.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.3
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 28 7.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.3
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 26 P*PARTSRRCDVRSA-RSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRS 172
P P R R A R R S+ +P+P RRR SP + P RRRRS
Sbjct: 422 PAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRR--SPSKSPQAPRRRRS 469
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/83 (30%), Positives = 34/83 (40%)
Frame = -1
Query: 453 PSGYXKEVPAKTPMAGQHXRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQ 274
P+ + P+K+P A + R P G S R R R A R RQ+ P+ +
Sbjct: 449 PAPRRRRSPSKSPQAPRRRRSPSGSKS-------RSPRRRR--SPAAAPRRRQS--PQRR 497
Query: 273 HGPPRVEPPRSNYTFXGAPFPPR 205
P R P S+ P PPR
Sbjct: 498 RSPRRRRSPSSSSRSRSPPPPPR 520
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 169
AR +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 27 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 169
AR +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 55 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 97
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 169
AR +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 169
AR +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 134 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 169
AR +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 35 ARTSRRCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 169
AR +RR RS R GRS + SPSRRR R + RRRR
Sbjct: 114 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 156
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -1
Query: 324 GTEAGRR----VRQAARPRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPP 184
GTE+G R RQA + H PP V PP+ P P + VA PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQPAV----PPKPAKISVADPP 301
>AF100305-6|AAC68915.1| 352|Caenorhabditis elegans Hypothetical
protein W04B5.2 protein.
Length = 352
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 6 GSRMVPRPDPRERRGAA---TSAARDRGQGDPRIP 101
G R P P PR+R GA +AA D G PR+P
Sbjct: 121 GFRQPPPPPPRKRTGAQPVYPAAANDPGDELPRLP 155
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 74 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPXKV*FERG 250
S + RS +P +R+ SP R P RR+RS + + S+ + K ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 285 PRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPPVIGSERLRLQVPGWRP 136
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 285 PRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPPVIGSERLRLQVPGWRP 136
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 74 SRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPXKV*FERG 250
S + RS +P +R+ SP R P RR+RS + + S+ + K ERG
Sbjct: 514 SEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERG 572
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 285 PRLQHGPPRVEPPRSNYTFXGAPFPPRAEVATPPVIGSERLRLQVPGWRP 136
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,657
Number of Sequences: 27780
Number of extensions: 212874
Number of successful extensions: 941
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -