Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D10
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355...    29   6.2  
06_01_0499 - 3581145-3582425                                           28   8.1  
06_01_0495 - 3546131-3547588                                           28   8.1  
04_03_0547 - 17032318-17032392,17032893-17032962,17032979-170331...    28   8.1  

>06_01_0497 +
           3555919-3557154,3557815-3558143,3558177-3558775,
           3558919-3560393
          Length = 1212

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 516 LPIKGDRRLCTQT-IVAVYFPEKLIEPLQVWLSTRSQHRFRSP*SGWR 656
           LP+   RR    T   A   PE +IE + + L  +S  RFRS    WR
Sbjct: 749 LPVAKRRRCVEPTGAAAACIPEDVIEQILLRLPVKSILRFRSVCKSWR 796


>06_01_0499 - 3581145-3582425
          Length = 426

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +3

Query: 525 KGDRRLCTQT------IVAVYFPEKLIEPLQVWLSTRSQHRFRSP*SGWR 656
           K  RRLC Q         A   PE ++E + + L  +S  RFRS    WR
Sbjct: 12  KRRRRLCVQVQPAGAGAAAAGIPEDIVEEILLRLPVKSVLRFRSVCKSWR 61


>06_01_0495 - 3546131-3547588
          Length = 485

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 516 LPIKGDRRLCTQT-IVAVYFPEKLIEPLQVWLSTRSQHRFRSP*SGWR 656
           LP+   RR    T   A   PE +IE + + L  +S  RFRS    WR
Sbjct: 21  LPVAKRRRCVEPTGAAAAGIPEDVIEQILLRLPVKSILRFRSVCKSWR 68


>04_03_0547 -
           17032318-17032392,17032893-17032962,17032979-17033103,
           17033196-17033252,17034152-17034217
          Length = 130

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 595 YKSGFRPGHSTVSALLKVVGDIXAGMQDTLASLYPWRE 708
           Y++G+ P    +S L +V G+I   +++ +A    W++
Sbjct: 24  YEAGWEPTGDAISPLDQVTGEIQHNLEEHIAQTQEWQQ 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,690,629
Number of Sequences: 37544
Number of extensions: 403773
Number of successful extensions: 886
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)