Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D10
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    50   2e-06
U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone...    30   2.4  
AF408758-1|AAO27837.1|  309|Caenorhabditis elegans nuclear recep...    30   2.4  
AF273773-1|AAG15122.1|  555|Caenorhabditis elegans nuclear recep...    30   2.4  
AF273772-1|AAG15121.1|  443|Caenorhabditis elegans nuclear recep...    30   2.4  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical pr...    29   5.5  
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AL117193-21|CAB60306.2|  318|Caenorhabditis elegans Hypothetical...    29   5.5  
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U41017-8|AAC48210.1|  233|Caenorhabditis elegans T box family pr...    28   7.3  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
 Frame = +1

Query: 280 EIKNIILSIK-SKAVGCDKISRRMIVTILDRLLPTI*HITNXXXXXXXXXXXWRKAYVFP 456
           E+ N+ + +  S A+G D I++  I  +       + ++ N           W+KA V  
Sbjct: 332 ELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIM 391

Query: 457 LPKIP-NPSFPNHFRSISILPFLSKVIDACAHKQLSQFIFRKNLLSP-YKSGFRPGHSTV 630
           +PK   +P+  + +R IS+L  ++K+++    K++     + ++ SP ++ GF+P HST 
Sbjct: 392 IPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRI-----KNSIESPAHQHGFKPEHSTT 446

Query: 631 SALLKVVGDIXAGM 672
           +A+++V  DI  G+
Sbjct: 447 TAVIQVTNDIIGGL 460


>U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 22 protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 333 NKSPYDRHNPGSSSANYIAHHKFLPIIRL 419
           N  P+D H   +S A +I H +F P++ +
Sbjct: 277 NSPPFDIHQASTSHAGFIQHVQFYPVVEV 305


>AF408758-1|AAO27837.1|  309|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 333 NKSPYDRHNPGSSSANYIAHHKFLPIIRL 419
           N  P+D H   +S A +I H +F P++ +
Sbjct: 7   NSPPFDIHQASTSHAGFIQHVQFYPVVEV 35


>AF273773-1|AAG15122.1|  555|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 333 NKSPYDRHNPGSSSANYIAHHKFLPIIRL 419
           N  P+D H   +S A +I H +F P++ +
Sbjct: 253 NSPPFDIHQASTSHAGFIQHVQFYPVVEV 281


>AF273772-1|AAG15121.1|  443|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 443

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 333 NKSPYDRHNPGSSSANYIAHHKFLPIIRL 419
           N  P+D H   +S A +I H +F P++ +
Sbjct: 141 NSPPFDIHQASTSHAGFIQHVQFYPVVEV 169


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -2

Query: 216 VQGATFRKYDHISSYRAQLKLLPIRQRRNLRVLTTLHSLLMSPESSSYLTPYFQYLHSSH 37
           V+G   +    ISS      L+PIR  R  R  T L   L+S +S S ++  F   H S 
Sbjct: 553 VKGINLKLPAIISSMEKLNNLVPIRSSRATRSSTQLDGYLLSLQSLSSISLDFTKFHKSF 612

Query: 36  E 34
           +
Sbjct: 613 D 613


>Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical
           protein C06G8.1 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 504 IYSSLPIKGDRRLCTQTIVAV-YFPEKLIEPLQVWLSTRSQHRFRSP*SGWR 656
           +Y SL + G   +CT  ++AV +F  K+  PL +   T +   F +P  G R
Sbjct: 99  LYISLKVLGVIGICTSLVLAVHFFGMKIFHPLGIVCLTLNIADFAAPLGGIR 150


>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
           protein F54F2.1 protein.
          Length = 1226

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = -2

Query: 327 TTHGFRFYGQDNIFDLIHSNRSKFKRVNIKSRQTIQIVQGATFRKYDHISSYRAQLKLLP 148
           T +   F  + N+ D     R+ F + ++KS ++I++ QG+  R  DH SS   +++L  
Sbjct: 523 TPNDLEFDLRFNLDDHSPEPRAYFLQKDVKSDRSIKVAQGSKTR--DHPSSIEQRVRLEK 580

Query: 147 IRQR 136
            RQ+
Sbjct: 581 GRQK 584


>AL117193-21|CAB60306.2|  318|Caenorhabditis elegans Hypothetical
           protein Y105C5A.14 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 175 GRYMIIFTKCRTLNYLNGLSRLNVDSFEFTSVAVDEIKNIILSIKSKA 318
           GRY  +FT  + L  L  LS++ +    F SV V   K  +L  +  A
Sbjct: 67  GRYDHVFTLEKLLKELISLSKIKMSGLTFVSVDVPITKKNVLHFRDSA 114


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 517 FLSKVIDACAHKQLSQFIFRKNLLSPYKSGFRPGHSTVSAL 639
           F+  ++   A+K +SQ +  +NLL+ Y    RP H+   AL
Sbjct: 16  FILHIVTINANKHVSQLL--ENLLTDYNKAVRPVHNASDAL 54


>U41017-8|AAC48210.1|  233|Caenorhabditis elegans T box family
           protein 41 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 539 PVHTNNCRSLFSGKTY*ALTSLAFDQVTAPFPLSLKWLATLXQVCK 676
           P+  N+    FS  TY +   +A  Q+  PFP  L  LA+  Q+C+
Sbjct: 173 PLPQNSMSYTFSYDTYPSNIHVAPIQLPFPFPAVLSTLASSLQLCR 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,626,898
Number of Sequences: 27780
Number of extensions: 354070
Number of successful extensions: 932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)