Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D09
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.39 
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    27   3.6  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   6.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 244 VRVHRANTGRSSNELDRQTTELERR 318
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = -2

Query: 195 LESGGESRSYVARSESIM----GDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLL 28
           +E G E    +A++E  +    GD  +        ++  V ++    N  +R F  TDL 
Sbjct: 261 IEGGAERHDLLAKTEQDINPQDGDEKINAKSPTTNSVTDVAKDQTVTNPKKRKFEVTDLA 320

Query: 27  KLSR-VNGPV 1
           + SR   GP+
Sbjct: 321 RGSRPAIGPI 330


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 168 YVARSESIMGDSDVAFSHSAALAIAQVRRNGNK 70
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,300
Number of Sequences: 5004
Number of extensions: 49537
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)