Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D09
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.18 
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933...    30   2.9  
01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555...    29   5.0  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   5.0  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.6  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.7  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.7  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 346 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 182
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>05_06_0051 -
           25190803-25191216,25191301-25191891,25193248-25193317,
           25193392-25193443,25195368-25195440,25195557-25195646
          Length = 429

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 373 RGTAKRGCHHRRGLRSPRPVYL 438
           R  +KRG H + GL +P PVY+
Sbjct: 398 RSNSKRGAHAKPGLAAPMPVYM 419


>01_07_0259 -
           42353992-42354111,42354255-42354385,42355484-42355571,
           42356439-42357282,42357354-42357934,42358962-42359159
          Length = 653

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -1

Query: 367 PPQAFRGHQPSAAAPLPCVPTQSFVDPI-HLKICLYSHGGLGLTNVSMSQMQGQVDYDFG 191
           PP   RG     A    C P  +    + +  +CL + G  G T  +M+ +      D  
Sbjct: 82  PPPCQRGAGGGGATATSCEPPNAAQSAVLYAALCLLAAGNGG-TRYNMAALGA----DQF 136

Query: 190 VGGGVPIVRCEERVDHGGQ*CCVFAFCRTSYSTSE 86
            G G P      R   GG   C FAF   SY+T +
Sbjct: 137 AGEGQP----RRRRQGGGFFSCYFAFLYASYATGD 167


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 458 PGDGAVIRYTGRGERSPRRWWQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 303
           P D    R + R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 213 PRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 244 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 360
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 250 VHRANTGRSSNELDRQTTELERRGVG 327
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 79  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 219
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,036,989
Number of Sequences: 37544
Number of extensions: 450541
Number of successful extensions: 1388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)