Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D08
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.17 
12_01_0524 - 4167867-4168445                                           29   3.8  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.6  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.7  
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    28   8.7  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.7  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.7  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   8.7  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 309 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 145
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 306 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 127
           QPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 126 CEERVDHEGQ*C 91
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 207 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 323
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 213 VHRANTGRSSNELDRQTTELERRGVG 290
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -3

Query: 840 APXXXXXXGNPGXERXQXQGGKXXPRXXRGXGPPRXXXGG 721
           AP      G PG  R   +GG+  PR   G G      GG
Sbjct: 68  APRDGAGRGGPGRGRGGGRGGRGGPRRDFGEGDANGFEGG 107


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 42  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 182
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTP 305
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 388 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 266
           R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,060,355
Number of Sequences: 37544
Number of extensions: 576806
Number of successful extensions: 1703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)