Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_D01
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.6  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    27   2.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   3.4  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   3.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   5.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   7.8  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 197 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 313
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 366 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 476
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 14  GVPQGSALSPLLFSLYINDI 73
           G PQGS +SP+L ++Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 479 ICRRSKMSLTNKVTLYKTCIRPVHDLC 559
           +C+R    L+N++     C  P H LC
Sbjct: 195 VCQRGHSPLSNRIVFCDGCNSPYHQLC 221


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
 Frame = +2

Query: 293 PTRRVNNPAP-AVRPITMYDQPIPWAPKVK-YLGVTLDSRMTFRPHIKTVRDRAAFI--L 460
           P+++ N+ +P  +    +Y  P P  P    Y+ + + + +    +   +R    F+  L
Sbjct: 116 PSKKTNSNSPLCLYEHRLYGIPNPPFPATSLYVSIDIKTVVCGFANGLVIRVEGDFVRDL 175

Query: 461 GRLYPMICRRSKMSLTNKVTLYKTCIRPVHDLCKCSVRSRGPHTLKILSNYSIPVF 628
           G    +I R  K S+TN + LY      V    +  V     +T K++SN+ IP+F
Sbjct: 176 GSRQDIILRE-KDSITNLI-LYSPKKLFVSTTTQVMVYKIKNNTKKVISNHGIPLF 229


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
 Frame = +2

Query: 221 NPTKSTAVLFKRGRPPNTTLS----IPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLG 388
           +P KS+  + ++    ++ LS     P   R  + PAP  RP++    P+          
Sbjct: 267 SPMKSSRDISRKPSMASSVLSPSDYFPQHRRFQSAPAPIPRPVSTLI-PLTQVRTTASNV 325

Query: 389 VTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLTNKVTLYKTCIRPVHDLCKCS 568
           +    + T RP       +    L + +  + RR        +        P H++ +  
Sbjct: 326 IKPRPQTTERPSTAQSFRKGGGFLKKTFKKLLRRGSSKRKPSLQPTPPVSYPAHNVPQKG 385

Query: 569 VRSRGPHTLK 598
           VR   PHTLK
Sbjct: 386 VRPASPHTLK 395


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +3

Query: 12  PESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 125
           P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 425 PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 427 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 323
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +2

Query: 74  PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 244
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 245 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 334
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 14  GVPQGSALSPLLFSLYINDI 73
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 245 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 415
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 416 RPHIKTVRDR 445
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,177
Number of Sequences: 5004
Number of extensions: 70831
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)