Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_D01
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 58 8e-09
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 56 4e-08
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 48 8e-06
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 41 0.001
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 33 0.26
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 32 0.45
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 30 1.8
Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical pr... 29 5.5
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 29 5.5
Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC024812-3|AAF59551.1| 183|Caenorhabditis elegans Hypothetical ... 28 7.3
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 28 9.7
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 28 9.7
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 28 9.7
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 28 9.7
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 28 9.7
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 58.0 bits (134), Expect = 8e-09
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 5/184 (2%)
Frame = +2
Query: 8 TAGVPQGSALSPLLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKKALLHRRLQTAAT 181
T GVPQG+ LSPLLF +Y+NDI +A FADDT +Y S K LQ+A
Sbjct: 74 TCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYAS-TPKTESENNLQSALD 132
Query: 182 TMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP 361
+ W + ++ +N +K T+ + + RR++ + PI
Sbjct: 133 AVVDWTKGSKLTLNQSK--------------TVHVTVGKRRID------FKYHLDGYPIE 172
Query: 362 WAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLTNK---VTLYKT 532
+ LG + ++ F H + + A F L ++ +K S +NK + LYKT
Sbjct: 173 RKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMF------NKYSTSNKKLMILLYKT 226
Query: 533 CIRP 544
IRP
Sbjct: 227 FIRP 230
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 55.6 bits (128), Expect = 4e-08
Identities = 39/138 (28%), Positives = 62/138 (44%)
Frame = +2
Query: 14 GVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQ 193
GVPQGS +SP LF+ Y+ D+P +T L +ADD +I +K ++Q + +
Sbjct: 532 GVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAK 591
Query: 194 WFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAPK 373
+ ++ + I+ KST +F P P I D PIP
Sbjct: 592 YLKERGMSISAEKSTVTVFSCD-----------PKEHKTKP-----DIYWMDDPIPVINA 635
Query: 374 VKYLGVTLDSRMTFRPHI 427
K LG+TL++ + H+
Sbjct: 636 PKLLGITLNTMTGTKDHV 653
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 48.0 bits (109), Expect = 8e-06
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 2/202 (0%)
Frame = +2
Query: 8 TAGVPQGSALSPLLFSLYIND--IPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAAT 181
++GVPQGS PLLF L+IN+ I +P +++ FADD I+++ +Q +
Sbjct: 878 SSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFHTD------PTIIQNSID 931
Query: 182 TMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP 361
+ W + + + PTKS + L TR N + ++ PI
Sbjct: 932 IIVSWSKLNELPLAPTKSAL--------------LALGTRNKN------QSYSVDGVPIT 971
Query: 362 WAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLTNKVTLYKTCIR 541
+ V+ LG+ D ++ F HI V + + R ++ S S LYKT +
Sbjct: 972 PSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVA 1028
Query: 542 PVHDLCKCSVRSRGPHTLKILS 607
P+ + C PH+ +LS
Sbjct: 1029 PIMNYCS---EVYAPHSNSVLS 1047
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 40.7 bits (91), Expect = 0.001
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 26/169 (15%)
Frame = +2
Query: 8 TAGVPQGSALSPLLFSLYINDIPRS--PETHLALFADDTAIYYSCRKKALLHRRLQTAAT 181
++GVP+GS P LF ++IN + S P + FADD +Y L +QT
Sbjct: 54 SSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVY--SHSPPL----IQTTID 107
Query: 182 TMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSI-PLPTRRVNNPAPAVR--------- 331
+ W ++ + K+ A+L K G N L + PL V A R
Sbjct: 108 LITTWSENNKLPLAVHKA-ALLNKLGFSSNCVLLLAPLINSLVCRLLAASRTGVSTVAHS 166
Query: 332 -----------PITMYD-QPIPWAPK--VKYLGVTLDSRMTFRPHIKTV 436
P T+Y +P +P + LG+ DS++TF+PHIK +
Sbjct: 167 KTCLLHLGKKNPKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI 215
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 233 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAP 370
ST + PP T P P R+ NP+P+ +P + P P P
Sbjct: 449 STGTSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPP 494
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 233 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAP 370
ST + PP T P P R+ NP+P+ +P + P P P
Sbjct: 456 STGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPP 501
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
M02E1.1a protein.
Length = 1077
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 278 LSIPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRA 448
++ PLP+ P VRP T +D IP+ ++G + T + R RA
Sbjct: 890 MATPLPSFN-GRPPSVVRPRTAFDMNIPYGTDSNFIGAKQFKKNTLSVEMTNARQRA 945
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 251 KRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIPWAP 370
K +PP + +PLP RR + P V P + P P P
Sbjct: 233 KTTKPPQHLIILPLPPRRASPAPPRVIPHVIMQPPRPRPP 272
>Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical
protein B0240.4 protein.
Length = 588
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 293 PTRRVNNPAPAVRPITMYDQPIPW 364
P R V++P +PIT++DQ + W
Sbjct: 46 PNRTVSSPRVQQKPITIFDQIVDW 69
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 72 ISLIYKLNSNGERAEPCGTP 13
ISL S GER +PCGTP
Sbjct: 50 ISLTNMPKSTGERTDPCGTP 69
>Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical
protein F56H6.11 protein.
Length = 663
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 309 LTRLVGRGMLSVVFGGRPLLKSTAVLFVGLMSMRHFRNHCPM 184
LT VG G+L ++ PLL + + ++G +S + H P+
Sbjct: 275 LTATVGTGLLMLLSENNPLLSNKVLTYIGDISYSLYLVHWPI 316
>AC024812-3|AAF59551.1| 183|Caenorhabditis elegans Hypothetical
protein Y54E10BR.5 protein.
Length = 183
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 339 VIGRTAGAGLLTRLVGRGMLSVVFGGRPLLKSTAVLFVGLMSMRHFRN 196
V+GRT G LL + GM++++ P LK + F+GL + H N
Sbjct: 141 VVGRTKG--LLPYV---GMVTIIMNDYPKLKYAVLAFLGLFVLLHKEN 183
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 551 HERGVCKFCRVSPYL*GTFYFAYISSGRDVLG*R-RHDRVPS*C 423
H R VC++CR + + S RDV+G R + D + + C
Sbjct: 68 HNRAVCRYCRFMKCISSGMRDDQVQSERDVIGKREKKDNMKTYC 111
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 551 HERGVCKFCRVSPYL*GTFYFAYISSGRDVLG*R-RHDRVPS*C 423
H R VC++CR + + S RDV+G R + D + + C
Sbjct: 124 HNRAVCRYCRFMKCISSGMRDDQVQSERDVIGKREKKDNMKTYC 167
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 551 HERGVCKFCRVSPYL*GTFYFAYISSGRDVLG*R-RHDRVPS*C 423
H R VC++CR + + S RDV+G R + D + + C
Sbjct: 69 HNRAVCRYCRFMKCISSGMRDDQVQSERDVIGKREKKDNMKTYC 112
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 551 HERGVCKFCRVSPYL*GTFYFAYISSGRDVLG*R-RHDRVPS*C 423
H R VC++CR + + S RDV+G R + D + + C
Sbjct: 90 HNRAVCRYCRFMKCISSGMRDDQVQSERDVIGKREKKDNMKTYC 133
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = -1
Query: 493 TSPTYHRVETS*DEGGTIAYRLDVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANGGGG 314
T PTY+ + GT A +L+ C + G+ YG +H+ +G
Sbjct: 131 TYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNH-----SNKMYGNALHKTHGDGSQD 185
Query: 313 VIDAPSRERDAQRGVRR 263
ID P R G RR
Sbjct: 186 AIDLPLRVIVETSGPRR 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,483,212
Number of Sequences: 27780
Number of extensions: 443361
Number of successful extensions: 1379
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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