Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C24
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0373 + 2783596-2784933                                           31   0.86 
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    29   3.5  
09_04_0506 - 18188785-18190599                                         29   4.6  
01_05_0227 - 19512866-19514983                                         29   6.1  
04_01_0041 - 464695-464850,467485-469029                               28   8.1  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   8.1  

>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +2

Query: 284 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 457
           TE  +N V V  L   SS   GY D  + ++   V      +  K+ V +D    TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224

Query: 458 VEGVNVLATPSSSRITIGGLALMHQ 532
           +  +N+L  P        G  L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPYXKEFAPG 667
           P+   PN +H PPQ   P  + P  P   +  PG
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPG 153


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 462 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 370
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 260 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPVTVD 430
           R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V +D
Sbjct: 45  RPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAVPLD 102


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = +2

Query: 224 DGL--LNV*SSLFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS 397
           DGL  + V   + +  ++ L       N  TV  + N    + GY+    +N+   +   
Sbjct: 192 DGLHEIQVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSH 251

Query: 398 APSLKIPVTVDLCWTTADVTVEGVNVLATPSS 493
            PSLK     D C  T ++ +EG++ L   S+
Sbjct: 252 VPSLK-----DFCEPTVEM-LEGMSALKALST 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,372,523
Number of Sequences: 37544
Number of extensions: 448760
Number of successful extensions: 1260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)