Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C23
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   196   2e-50
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   194   6e-50
01_05_0125 - 18382402-18382761,18382863-18383036                       29   3.6  
05_04_0324 - 20273797-20274261                                         29   4.7  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  196 bits (478), Expect = 2e-50
 Identities = 83/116 (71%), Positives = 103/116 (88%)
 Frame = +2

Query: 50  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = +3

Query: 627 KMIRYCSVVRVIAHTQMXLLNSDKXRLT-LWKIQLNGGTIEDKVKWAXKHLEXLSLVD 797
           KM +Y S+VRVIAHTQ+  +   K +   L +IQ+NGGTI DKV +  K  E    VD
Sbjct: 152 KMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVD 209


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  194 bits (474), Expect = 6e-50
 Identities = 82/116 (70%), Positives = 103/116 (88%)
 Frame = +2

Query: 50  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKN 121



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +3

Query: 627 KMIRYCSVVRVIAHTQMXLLNSDKXRLT-LWKIQLNGGTIEDKVKWAXKHLEXLSLVD 797
           KM +Y SVVRVI HTQ+  +   K +   L +IQ+NGGTI DKV +  K  E    VD
Sbjct: 152 KMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVD 209


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 410 REESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 279
           R+  S    ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 38  RQTMSRLYDELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 128 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 301
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 302 VGYIETPHGLRAL 340
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,973,977
Number of Sequences: 37544
Number of extensions: 434014
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)