Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C21
(849 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 348 5e-96
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 348 5e-96
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 348 5e-96
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 337 1e-92
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 337 1e-92
AE014297-1263|AAF54612.2| 161|Drosophila melanogaster CG4863-PD... 225 8e-59
AE014297-1266|AAF54611.1| 125|Drosophila melanogaster CG4863-PC... 206 3e-53
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 348 bits (856), Expect = 5e-96
Identities = 163/254 (64%), Positives = 188/254 (74%), Gaps = 1/254 (0%)
Frame = +2
Query: 50 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGS
Sbjct: 17 FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 76
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
KINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 77 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKS 136
Query: 410 XXXXXXXXXXXWQDELGRKSIXKDFKKMIRYCXVVRVIAHTQMXLLKQRQXXAHIMEIQL 589
W D+LG+KSI DF+KM+RYC V+RVIAH+Q+ L+KQRQ AH+MEIQL
Sbjct: 137 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 196
Query: 590 NGGTIEDKVKWAXEHLEKPXPVRFCVCPX*ND*LHWVS-PRAKDTKVSLLXGTQRXYPXK 766
NGG+IEDKVKWA EHLEKP V ++ + V + K K + P K
Sbjct: 197 NGGSIEDKVKWAREHLEKPIQVSNVFGQ--DEMIDCVGVTKGKGFKGVTSRWHTKKLPRK 254
Query: 767 XHKGLRXVACLGXW 808
HKGLR VAC+G W
Sbjct: 255 THKGLRKVACIGAW 268
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 348 bits (856), Expect = 5e-96
Identities = 163/254 (64%), Positives = 188/254 (74%), Gaps = 1/254 (0%)
Frame = +2
Query: 50 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
KINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 66 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIXKDFKKMIRYCXVVRVIAHTQMXLLKQRQXXAHIMEIQL 589
W D+LG+KSI DF+KM+RYC V+RVIAH+Q+ L+KQRQ AH+MEIQL
Sbjct: 126 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 185
Query: 590 NGGTIEDKVKWAXEHLEKPXPVRFCVCPX*ND*LHWVS-PRAKDTKVSLLXGTQRXYPXK 766
NGG+IEDKVKWA EHLEKP V ++ + V + K K + P K
Sbjct: 186 NGGSIEDKVKWAREHLEKPIQVSNVFGQ--DEMIDCVGVTKGKGFKGVTSRWHTKKLPRK 243
Query: 767 XHKGLRXVACLGXW 808
HKGLR VAC+G W
Sbjct: 244 THKGLRKVACIGAW 257
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 348 bits (856), Expect = 5e-96
Identities = 163/254 (64%), Positives = 188/254 (74%), Gaps = 1/254 (0%)
Frame = +2
Query: 50 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
KINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 66 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIXKDFKKMIRYCXVVRVIAHTQMXLLKQRQXXAHIMEIQL 589
W D+LG+KSI DF+KM+RYC V+RVIAH+Q+ L+KQRQ AH+MEIQL
Sbjct: 126 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 185
Query: 590 NGGTIEDKVKWAXEHLEKPXPVRFCVCPX*ND*LHWVS-PRAKDTKVSLLXGTQRXYPXK 766
NGG+IEDKVKWA EHLEKP V ++ + V + K K + P K
Sbjct: 186 NGGSIEDKVKWAREHLEKPIQVSNVFGQ--DEMIDCVGVTKGKGFKGVTSRWHTKKLPRK 243
Query: 767 XHKGLRXVACLGXW 808
HKGLR VAC+G W
Sbjct: 244 THKGLRKVACIGAW 257
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 337 bits (828), Expect = 1e-92
Identities = 158/246 (64%), Positives = 183/246 (74%), Gaps = 1/246 (0%)
Frame = +2
Query: 74 MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 253
M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1 MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60
Query: 254 EAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXX 433
EAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 61 EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKA 120
Query: 434 XXXWQDELGRKSIXKDFKKMIRYCXVVRVIAHTQMXLLKQRQXXAHIMEIQLNGGTIEDK 613
W D+LG+KSI DF+KM+RYC V+RVIAH+Q+ L+KQRQ AH+MEIQLNGG+IEDK
Sbjct: 121 SKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDK 180
Query: 614 VKWAXEHLEKPXPVRFCVCPX*ND*LHWVS-PRAKDTKVSLLXGTQRXYPXKXHKGLRXV 790
VKWA EHLEKP V ++ + V + K K + P K HKGLR V
Sbjct: 181 VKWAREHLEKPIQVSNVFGQ--DEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 238
Query: 791 ACLGXW 808
AC+G W
Sbjct: 239 ACIGAW 244
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 337 bits (828), Expect = 1e-92
Identities = 158/246 (64%), Positives = 183/246 (74%), Gaps = 1/246 (0%)
Frame = +2
Query: 74 MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 253
M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1 MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60
Query: 254 EAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXX 433
EAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 61 EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKA 120
Query: 434 XXXWQDELGRKSIXKDFKKMIRYCXVVRVIAHTQMXLLKQRQXXAHIMEIQLNGGTIEDK 613
W D+LG+KSI DF+KM+RYC V+RVIAH+Q+ L+KQRQ AH+MEIQLNGG+IEDK
Sbjct: 121 SKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDK 180
Query: 614 VKWAXEHLEKPXPVRFCVCPX*ND*LHWVS-PRAKDTKVSLLXGTQRXYPXKXHKGLRXV 790
VKWA EHLEKP V ++ + V + K K + P K HKGLR V
Sbjct: 181 VKWAREHLEKPIQVSNVFGQ--DEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKV 238
Query: 791 ACLGXW 808
AC+G W
Sbjct: 239 ACIGAW 244
>AE014297-1263|AAF54612.2| 161|Drosophila melanogaster CG4863-PD,
isoform D protein.
Length = 161
Score = 225 bits (549), Expect = 8e-59
Identities = 97/118 (82%), Positives = 106/118 (89%)
Frame = +2
Query: 50 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 403
KINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 66 KINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWY 123
>AE014297-1266|AAF54611.1| 125|Drosophila melanogaster CG4863-PC,
isoform C protein.
Length = 125
Score = 206 bits (503), Expect = 3e-53
Identities = 90/108 (83%), Positives = 99/108 (91%)
Frame = +2
Query: 74 MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 253
M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1 MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60
Query: 254 EAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
EAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKN
Sbjct: 61 EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 108
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,749,090
Number of Sequences: 53049
Number of extensions: 736177
Number of successful extensions: 1602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -