Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C19
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    40   7e-04
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    29   0.93 

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 26/73 (35%), Positives = 35/73 (47%)
 Frame = +1

Query: 352 IWQDVTKGXVRFVNDIFTHRGYLWNLRCPARTPGEXPXSX*XLXRARGATTNXVXXIXIG 531
           I QD  KG +RFV + F H GY+WN     +T  E P       +A+G  ++ +    IG
Sbjct: 70  IKQDTKKGKLRFVRNCFPHHGYIWNYGAFPQT-YEDPNVVHPETKAKG-DSDPLDVCEIG 127

Query: 532 ERVASXGDVYPVK 570
           E     G V  VK
Sbjct: 128 EARGYTGQVKQVK 140


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 352 IWQDVTKGXVRFVNDIFTHRGYLWN 426
           I QD+  G +R+V + F + G++WN
Sbjct: 75  IKQDLKNGKLRYVANSFPYHGFIWN 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,897
Number of Sequences: 5004
Number of extensions: 30777
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)