Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C18
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 155 1e-38
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 100 3e-22
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 93 6e-20
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 89 6e-19
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 85 2e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 84 2e-17
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 83 4e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 79 6e-16
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 75 1e-14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 73 4e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 71 3e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 70 5e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 69 1e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 8e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 65 1e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 65 1e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 64 2e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 64 3e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 62 1e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 5e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 57 3e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 55 1e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 52 8e-08
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.9
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.5
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 27 4.4
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 5.9
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 7.8
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 7.8
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 155 bits (375), Expect = 1e-38
Identities = 75/156 (48%), Positives = 104/156 (66%)
Frame = +2
Query: 281 LLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLI 460
+L+L PTREL Q H+V ++A F K E LR+ PDI IATPGR I
Sbjct: 333 VLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFI 392
Query: 461 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKD 640
DH+RN+ F + +IE++V+DEADRML++ FA+ + EII+ C RQTMLFSATM+++V D
Sbjct: 393 DHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDD 452
Query: 641 LAAVSLKKPVKLFVNSNKEVAFNLRXEFVRIPKERE 748
L +SL +PV++FV++ K A L EFVR+ +RE
Sbjct: 453 LIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRE 488
Score = 70.5 bits (165), Expect = 3e-13
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
++SF +MNLSRP++K + +L F PT IQ TIP+ALLGKD+ +++PI
Sbjct: 258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPI 317
Query: 232 LERLLYKAK 258
LERLLY+ K
Sbjct: 318 LERLLYRPK 326
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 100 bits (239), Expect = 3e-22
Identities = 54/144 (37%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Frame = +2
Query: 257 KEGTGSPALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIX 436
+ GTG ++++ PTREL Q+ V ++L ++ + L + ++
Sbjct: 159 RNGTG---VIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLL 215
Query: 437 IATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQC-SPKRQTMLFS 613
+ATPGRL+DH++NT F ++ LV+DEADR+L+ F + M++I++ S RQT+LFS
Sbjct: 216 VATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFS 275
Query: 614 ATMSEEVKDLAAVSLKKPVKLFVN 685
AT + +V+DLA +SL KP L+VN
Sbjct: 276 ATQTTKVEDLARISL-KPGPLYVN 298
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F ++ LS + KAI + F T IQ +IP L G+DV +++P +E
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE- 149
Query: 241 LLYKAK 258
+LY K
Sbjct: 150 MLYALK 155
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 92.7 bits (220), Expect = 6e-20
Identities = 49/151 (32%), Positives = 79/151 (52%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLID 463
+VL PTREL Q+ + L + P + + TPGRL+D
Sbjct: 118 VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 464 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKDL 643
H+ NT F L +++ L++DEADR+LD F + +I++ +R+T+LFSATM+ +V+ L
Sbjct: 178 HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKL 237
Query: 644 AAVSLKKPVKLFVNSNKEVAFNLRXEFVRIP 736
SL +PV++ V+S L ++ P
Sbjct: 238 QRASLHQPVRVAVSSKFSTVDTLIQRYLFFP 268
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + + L +A L F PTPIQ IP+ L +DV + LP+++
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 238 RL 243
L
Sbjct: 107 EL 108
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 89.4 bits (212), Expect = 6e-19
Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Frame = +2
Query: 254 RKEGTGSPAL--LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNP 427
RK+ T L LV+ PTREL Q ++ + K + L +
Sbjct: 103 RKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM- 161
Query: 428 DIXIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTML 607
+I + TPGRL+ HI +F +++L+LDEADR+LD F + I+ RQTML
Sbjct: 162 NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTML 221
Query: 608 FSATMSEEVKDLAAVSLKKP--VKLFVNSNKEVAFNLRXEFVRIPKERECD 754
FSAT ++ VKDLA +SL+ P + + N NL ++ +P + D
Sbjct: 222 FSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLD 272
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 84.6 bits (200), Expect = 2e-17
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLID 463
L+L P REL Q V + ++ + S+L PDI +ATPGR +
Sbjct: 143 LILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL- 201
Query: 464 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKDL 643
H++ L SIE +V DEADR+ + FA + EI+ RQT+LFSAT+ + D
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDF 261
Query: 644 AAVSLKKPVKLFVNSNKEVAFNLRXEFVRI-PKERE 748
A L+ PV + ++ +V+ +L+ F + ERE
Sbjct: 262 AKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAERE 297
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1
Query: 55 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
++F +M L++ L++AI F PTPIQ TIP+ L G+DV +++P++
Sbjct: 69 SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI 128
Query: 235 ERL 243
E L
Sbjct: 129 EHL 131
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 84.2 bits (199), Expect = 2e-17
Identities = 53/151 (35%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Frame = +2
Query: 257 KEGTGSPALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIX 436
K G G P +++ PTREL Q+ + + K + L++ +I
Sbjct: 487 KTGEG-PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIV 545
Query: 437 IATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLF 610
+ TPGR+ID + LH LVLDEADRM D F + II P RQT+LF
Sbjct: 546 VCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLF 605
Query: 611 SATMSEEVKDLAAVSLKKPVKLFVNSNKEVA 703
SAT ++ LA LKKPV++ V VA
Sbjct: 606 SATFPRAMEALARKVLKKPVEITVGGRSVVA 636
Score = 33.5 bits (73), Expect = 0.039
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
S+ LS + I SL + PT IQA IP G+DV ++LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 238 RL 243
+
Sbjct: 479 HI 480
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 83.4 bits (197), Expect = 4e-17
Identities = 60/166 (36%), Positives = 82/166 (49%), Gaps = 8/166 (4%)
Frame = +2
Query: 275 PALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGR 454
P +LV+ PTREL Q + L Q K ++ +N + I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQ-GTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGR 295
Query: 455 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQC-----SPKRQTMLFSAT 619
L+D I N S + LVLDEADRMLD F + ++ II + RQT+ FSAT
Sbjct: 296 LLDLI-NDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
Query: 620 MSEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRXEFVRI---PKERE 748
E V+ LAA LK PVK+ + S++ A + V I P+ +E
Sbjct: 355 WPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKE 400
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 103 GSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 243
G N+ PTPIQAAT P L G+DV + +P L+ L
Sbjct: 181 GLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL 227
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 79.4 bits (187), Expect = 6e-16
Identities = 50/138 (36%), Positives = 72/138 (52%)
Frame = +2
Query: 275 PALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGR 454
P +LVL PTREL Q+ + + L + +I IATPGR
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGR 255
Query: 455 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEV 634
L+D + + + L + LVLDEADRMLD F +++I+ Q P RQT++FSAT +EV
Sbjct: 256 LLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEV 314
Query: 635 KDLAAVSLKKPVKLFVNS 688
+ LA L +++ V S
Sbjct: 315 QRLARDYLNDYIQVTVGS 332
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 88 LMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
++K + L F PTPIQ P+A+ G+D+ Y LP +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 74.9 bits (176), Expect = 1e-14
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Frame = +2
Query: 275 PALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGR 454
P L+L PTREL Q+H +R+ + + Q D+ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 455 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCS----PKRQTMLFSATM 622
L+D I + L +I+ LVLDEADRMLD F ++ I+ +RQT++FSAT
Sbjct: 316 LVDLI-DRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATF 374
Query: 623 SEEVKDLAAVSLKKPVKLFVNSNKEVAFNLRXEFVRI 733
+++ LA LK V L V + N+ + V +
Sbjct: 375 PRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHV 411
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
F + L+ L++ I + PTP+Q +IPI G+D+ ++ PIL
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 73.3 bits (172), Expect = 4e-14
Identities = 40/153 (26%), Positives = 74/153 (48%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLID 463
L+L PTREL Q+ V L + + L+ + + TPGR+ D
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 464 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKDL 643
I+ + ++++ VLDEAD ML F + + +I + P Q +L SATM ++V ++
Sbjct: 151 MIQRR-ALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 644 AAVSLKKPVKLFVNSNKEVAFNLRXEFVRIPKE 742
++ P+++ V ++ ++ +V + KE
Sbjct: 210 TTKFMRDPIRILVKKDELTLEGIKQFYVAVEKE 242
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +1
Query: 43 YDENA-SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXY 219
YDE +F +MNL L++ I + F P+ IQ I L +DV +
Sbjct: 14 YDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF 73
Query: 220 MLPILERLLYKAKGGDRITSAP 285
+ +L+++ K + AP
Sbjct: 74 SISVLQKIDTSLKQCQALILAP 95
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 70.5 bits (165), Expect = 3e-13
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Frame = +2
Query: 248 TRRKEGTGSPALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYX-------- 403
TRR L++ PTREL Q+ VT++L + Y
Sbjct: 64 TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTN 123
Query: 404 --ESVLRQNPDIXIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIR 577
S +NP + I TPGRL + + + S +E+L+LDEAD ++D F ++ II
Sbjct: 124 DLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIIS 180
Query: 578 QCSPKRQTMLFSATMSEEVKD-LAAVSLKKPVKLFV 682
Q +R+T LFSATM++ V L L+ V++ V
Sbjct: 181 QLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSV 216
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
SF ++N+ + L A+ + F TP+QA IP+ L KD+ Y+LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 238 RL 243
++
Sbjct: 62 KV 63
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 69.7 bits (163), Expect = 5e-13
Identities = 42/153 (27%), Positives = 71/153 (46%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLID 463
L+L PTREL Q+ V L L + TPGR+ D
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 464 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKDL 643
IR + ++++L+LDEAD +L++ F E + +I R P Q ++ SAT+ ++V ++
Sbjct: 153 MIRRR-NLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Query: 644 AAVSLKKPVKLFVNSNKEVAFNLRXEFVRIPKE 742
PV++ V ++ L+ F+ + KE
Sbjct: 212 TNKFTTNPVRILVKRDELTLEGLKQYFIAVEKE 244
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 55 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDV 177
+SF MNL L++ I + + P+ +Q+ I G+DV
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDV 61
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 68.5 bits (160), Expect = 1e-12
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXK--YXESVLRQNPDIXIATPGRL 457
L+LVPTREL QV+ V +L F +L PDI IATP R
Sbjct: 92 LLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRC 151
Query: 458 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVK 637
+ H+ + L ++ LV+DEAD ML + E MK + R Q+ L SAT+S+ +
Sbjct: 152 VVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIA 210
Query: 638 DLAAVSLKKPVKLFVNSNKEVAFNLRXEFVRIPKE 742
L + + P L V +KE + L V+ ++
Sbjct: 211 SLQKLVCRNPFILAV-KDKEASGKLTQYVVKCSEQ 244
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + NL L +AI F PT +Q+ TIP+AL GKD+ Y++PILE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 238 RLL 246
LL
Sbjct: 75 LLL 77
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 65.7 bits (153), Expect = 8e-12
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLID 463
L+L PTREL Q+ L L + P + +ATPGRL D
Sbjct: 79 LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Query: 464 HIRNTPS---FGLHSIEVLVLDEADRMLDEYFAEXMKEI--IRQCSPKRQTMLFSATMSE 628
IR+ GL I+ LV+DEADR+L FA+ + + + S RQT+LF+AT+++
Sbjct: 139 LIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTD 198
Query: 629 EVKDL 643
++ L
Sbjct: 199 AIRQL 203
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
SF ++ +S L+ + +L PT IQ I L G++ + LPI+E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 238 R 240
+
Sbjct: 68 K 68
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 65.3 bits (152), Expect = 1e-11
Identities = 41/164 (25%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Frame = +2
Query: 269 GSPALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXX-KYXESVLR---QNPDIX 436
G ++LVL TREL Q+ + +++ K + ++P I
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 437 IATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEXMKEIIRQCSPKRQTMLFS 613
+ATPGRL +R ++S++ VLDE D++L+ ++E+ R P++Q M+FS
Sbjct: 178 VATPGRLNALVREK-ILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 614 ATMSEEVKDLAAVSLKKPVKLFVNSNKEVAFN-LRXEFVRIPKE 742
AT+S E++ + ++ P++++V+ ++ + L+ +V++ ++
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEK 280
Score = 33.5 bits (73), Expect = 0.039
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
+ F + L L++AI F HP+ +Q IP ++LG DV ++L
Sbjct: 50 STGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLST 109
Query: 232 LERL 243
L+++
Sbjct: 110 LQQI 113
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 65.3 bits (152), Expect = 1e-11
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQ-NPDIXIATPGRLI 460
++L PTREL Q+ R+L E+ +R+ N ++ IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 461 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQ-CSPKRQTMLFSATMSEEVK 637
DH++N S + +LDEADR++D FAE + I + K + + FSATM +V
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVS 235
Query: 638 DL 643
++
Sbjct: 236 NV 237
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 64.1 bits (149), Expect = 2e-11
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQ---FXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGR 454
+++ PTREL Q++ V +L K ++ +R+ +I I TPGR
Sbjct: 220 VIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGR 279
Query: 455 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEII----RQCS--------PKRQ 598
L DH+ NT + + + +VLDE DR++D F E + +I+ Q S P R+
Sbjct: 280 LADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRK 339
Query: 599 -TMLFSATMSEEVKDLAAVSLKKPVKL 676
TML SATM + VK L+ +LK + L
Sbjct: 340 VTMLCSATMKDTVKRLSDSALKDALYL 366
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 63.7 bits (148), Expect = 3e-11
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Frame = +2
Query: 269 GSPALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESV--LRQNPDIXIA 442
G +++ PTREL Q++ +L+ F K E LR+ D+ I
Sbjct: 114 GGYRAIIVAPTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEKIQEKAPKLREKYDMCIG 172
Query: 443 TPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQC-SPKRQTMLFSAT 619
TP RL+ I+ SF +E V+DEADR+ + F E I+ C S LFSAT
Sbjct: 173 TPMRLVQAIQTGLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSAT 230
Query: 620 MSEEVKDLAAVSLKKPVKLFV 682
+ V++LA V P+++ V
Sbjct: 231 IPSRVEELAKVVTVDPIRIIV 251
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 61.7 bits (143), Expect = 1e-10
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNP-----DIXIATP 448
+V+VPTREL QV ++ L + D+ ++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 449 GRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCS-PK 592
GRL+DHIRN SF L + +V+DEADR+LD+ F + + ++ + S PK
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 31 EPPPYDENAS--FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIAL 162
EP D N + F ++N+S L++ + N +QAA +P+ L
Sbjct: 116 EPITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLL 161
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.7 bits (138), Expect = 5e-10
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Frame = +2
Query: 275 PALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGR 454
P +VL PTREL Q+ + A+ + + Q I +ATPGR
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGR 385
Query: 455 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEII-------------------R 577
L+D + F L +V+DEADRMLD F + + +I+
Sbjct: 386 LLDCLERR-LFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATAN 444
Query: 578 QCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 688
S +RQT++FSAT+ V +LA L +PV L + +
Sbjct: 445 SSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGN 481
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 76 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
L ++K + +N+ P+ IQ A IP+ L KD+ +++P++
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI 308
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 57.2 bits (132), Expect = 3e-09
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLID 463
LV+ PTREL Q+ + + + +L ++P + +ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 464 HIR-NTPSFGLHSIEVLVLDEADRMLDE-YFAEXMK--EII-RQCSPKRQTMLFSATMSE 628
I N + I+ LVLDEADR+L + +F E K EI+ +RQT +FSAT E
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Query: 629 EVKDLAAVSLKKPVKLFVNSNKE 697
++ ++K + NS E
Sbjct: 316 GLQQRLKKNMKGNITEKYNSPME 338
Score = 33.5 bits (73), Expect = 0.039
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 55 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
+++ + +LS ++ ++ F P PIQ+ IP A +G D+ + +PIL
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 235 ERLL 246
E L
Sbjct: 182 EHCL 185
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 54.8 bits (126), Expect = 1e-08
Identities = 36/131 (27%), Positives = 56/131 (42%)
Frame = +2
Query: 284 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGRLID 463
L+LVPTREL Q V + L + + L I + TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 464 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKDL 643
+ V+DEAD++L F +++++ RQ L+SAT VK+
Sbjct: 176 -LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNF 234
Query: 644 AAVSLKKPVKL 676
L KP ++
Sbjct: 235 MDKHLNKPYEI 245
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + L R L+ I F P+PIQ +IPIAL G+D+ +++P LE+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 241 L 243
+
Sbjct: 106 V 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 52.4 bits (120), Expect = 8e-08
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = +2
Query: 275 PALLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXXXKYXESVLRQNPDIXIATPGR 454
P + L P+REL Q+ V ++ ++ K + + I I TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI----DAQIVIGTPGT 240
Query: 455 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKR-QTMLFSATMSEE 631
++D ++ I+V VLDEAD MLD+ I+ P+ Q +LFSAT SE
Sbjct: 241 VMDLMKRR-QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
Query: 632 VKDLA 646
V+ A
Sbjct: 300 VEKYA 304
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 501 SRFWCWTKLTGCWMNT 548
SRF+C+TK+ G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 85 PLMKAIGSLNFVHPTP 132
PL +AIGS +F+HP P
Sbjct: 127 PLRRAIGSYDFLHPRP 142
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/68 (22%), Positives = 21/68 (30%)
Frame = +3
Query: 87 SHEGYWLSELCTPNAHTSRNHSYCTFXXXXXXXXXXXXXXDGCIHAAHTGASPVQGERRG 266
++ GYW +L N H H AH G SP+ +
Sbjct: 94 AYHGYWAEDLTQLNPHFGTKQDLTELVDQLHKRNMLCMIDIVVNHMAHAGDSPIDYSKYA 153
Query: 267 PDHQRSWY 290
P + S Y
Sbjct: 154 PFNSPSHY 161
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 5.9
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +2
Query: 482 SFGLHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLK 661
S G+ + E L D D + +E + +++ Q + SAT EEVK VS K
Sbjct: 463 SLGVFNYE-LKEDNDDLCTENDSSEGDSDSLKKVDFLGQIAMMSATDREEVKSSIVVSTK 521
Query: 662 KPVKLFVNSNKEVAF 706
K L E+ F
Sbjct: 522 KSTILEFAKEIEIIF 536
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 634 DFLAHGGREQHGL--TFRGTLTDD 569
DF+ +GGREQH + R LT+D
Sbjct: 82 DFIVYGGREQHLMFPLLRAGLTND 105
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 491 LHSIEVLVLDEADRMLDEYFAEXMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKK 664
L E+L+LDE LD + + IR + T++ + MS+ D + + K
Sbjct: 586 LRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDK 643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,367
Number of Sequences: 5004
Number of extensions: 66004
Number of successful extensions: 240
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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