Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C17
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    26   0.38 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    26   0.38 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   0.38 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.51 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   2.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.7  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 307 PPTPYWRGRSSPNSGRYRPPSTGRW 233
           PPTP+ R    PN+ R+RPP   R+
Sbjct: 152 PPTPFPRF-IPPNAYRFRPPQNPRF 175


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 307 PPTPYWRGRSSPNSGRYRPPSTGRW 233
           PPTP+ R    PN+ R+RPP   R+
Sbjct: 152 PPTPFPRF-IPPNAYRFRPPQNPRF 175


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 307 PPTPYWRGRSSPNSGRYRPPSTGRW 233
           PPTP+ R    PN+ R+RPP   R+
Sbjct: 390 PPTPFPRF-IPPNAYRFRPPQNPRF 413


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 85  GYWIYCPSWLDRWRVAVNVGKTAAIL 162
           GYW++ P + D W     +  TA+IL
Sbjct: 89  GYWVFGPRFCDTWIAFDVMCSTASIL 114


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 307 PPTPYWRGRSSPNSGRYRPPSTGRW 233
           P TP+ R   SPN+ R+RPP   R+
Sbjct: 154 PSTPFPRF-ISPNAYRFRPPLNPRF 177


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 91  WIYCPSWLDRWRVAVNVGKTAAIL 162
           W++   W D WR    +  TA+IL
Sbjct: 112 WLFTTDWCDVWRSLDVLFSTASIL 135


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 221 SSLDPASGTWGSISTGVWG*PPTPI 295
           S+   ASG WG I+ G++   P P+
Sbjct: 341 SATHGASGIWGIIAIGLFADNPYPL 365


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 281 VIPKLRSISTPKYRTLDLNSTLAPRRLSCPGTTLVRTGPKRIAAV 147
           +I  +RS+  P+    DLN++   +++  P    V T  ++ A V
Sbjct: 140 LINNVRSVCPPQLLVFDLNTSQLLKQVKIPHDIAVNTTTEKGALV 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,698
Number of Sequences: 438
Number of extensions: 6510
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)