Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C16
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   304   8e-84
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   304   1e-83
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    29   0.80 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.3  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   7.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  304 bits (747), Expect = 8e-84
 Identities = 145/258 (56%), Positives = 184/258 (71%)
 Frame = +1

Query: 46  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 225
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 226 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 405
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+K 
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 406 KKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQXKAHIMEIQL 585
           KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     Q KAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 586 NGGTIEDKVKWATEHLEKPXPVRFCVCPR*K*LTALVSPGQRIQRCXFSVGPXXNXPXXN 765
           NGG++ DKV+WA EH EK   ++             V+ G+  +      G     P   
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWG-TKRLPRKT 242

Query: 766 TXGFRKXACXGPWXPSRV 819
             G RK AC G W P+ V
Sbjct: 243 HRGLRKVACIGAWHPANV 260



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 675 KMIDCXGVPRAKDTKVSLFRWPTKXLXX*XHXG 773
           +MID  GV R K  + +  RW TK L    H G
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  304 bits (746), Expect = 1e-83
 Identities = 144/258 (55%), Positives = 184/258 (71%)
 Frame = +1

Query: 46  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 225
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 226 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 405
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+K 
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 406 KKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQXKAHIMEIQL 585
           KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     Q KAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 586 NGGTIEDKVKWATEHLEKPXPVRFCVCPR*K*LTALVSPGQRIQRCXFSVGPXXNXPXXN 765
           NGG++ DKV+WA EH EK   ++             V+ G+  +      G     P   
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWG-TKRLPRKT 242

Query: 766 TXGFRKXACXGPWXPSRV 819
             G RK AC G W P+ V
Sbjct: 243 HRGLRKVACIGAWHPANV 260



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 675 KMIDCXGVPRAKDTKVSLFRWPTKXLXX*XHXG 773
           +MID  GV R K  + +  RW TK L    H G
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 207 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMSGVLKIFCAT 31
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P + V  IF  +
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIFLIS 403

Query: 30  CWKTVAN*P 4
                +N P
Sbjct: 404 AALLCSNLP 412


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 34  RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 153
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +1

Query: 25  PACRTENFQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 201
           P C      H  + S   +P     +  G  K FP D+P S P+  +   G     T  +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350

Query: 202 REPDRPGSKI 231
           + P++   +I
Sbjct: 351 KVPEKSNKEI 360


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 499 CSVVRVIAHTQMKLLKQRQXKAHIMEIQLNGGTIEDK 609
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,548
Number of Sequences: 5004
Number of extensions: 65949
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)