Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C15
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0165 + 15274448-15277336                                         29   4.7  
05_07_0339 - 29375424-29377166,29377272-29377441,29377888-293780...    29   4.7  
03_05_0017 - 19819416-19820150                                         29   6.2  
01_01_1011 - 8003080-8004216                                           29   6.2  
04_04_1226 - 31872413-31873036                                         28   8.2  

>09_04_0165 + 15274448-15277336
          Length = 962

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 428 RSRHPSAQRXYGVVTVXEDTS-EENSIINAQEPIDAKAAGSV 550
           R  HP A    GVV+  ED+S  E ++  +  P DA ++G V
Sbjct: 74  RKNHPRASLVNGVVSSLEDSSGGEPALCVSDSPEDASSSGKV 115


>05_07_0339 -
           29375424-29377166,29377272-29377441,29377888-29378030,
           29378363-29378478,29378576-29378814,29378909-29379110,
           29379212-29379430,29379657-29379724,29379806-29379812,
           29380404-29380616
          Length = 1039

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 310 PQLDVLSVLLHVPCARHADAARVYGG 387
           P+L+++ V+L +PC   A AA + GG
Sbjct: 625 PRLELMLVILAMPCVSQASAALIRGG 650


>03_05_0017 - 19819416-19820150
          Length = 244

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 453 RCALGCLDRSMVGVSRVNRCSCATVDSCG 367
           RC  G  D S  G  RV+RC  A+V  CG
Sbjct: 172 RC--GSADVSRCGAVRVDRCRAASVSGCG 198


>01_01_1011 - 8003080-8004216
          Length = 378

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 253 KYLALAAGGEVRRSVRGFVPQLDVLSVLLHVPCARHAD-AARVYGGARTT 399
           +++ LAA  +VRRS R F P  D +  L   P   H   AAR+  G   T
Sbjct: 30  EWIMLAAVPDVRRSSRMFPPGTDFVLALKKPPHVSHVTVAARIAPGLPAT 79


>04_04_1226 - 31872413-31873036
          Length = 207

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 485 TSEENSIINAQEPIDAKAAGS 547
           TSEEN  +   EPI+A ++GS
Sbjct: 2   TSEENKAVTPNEPIEASSSGS 22


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,518,497
Number of Sequences: 37544
Number of extensions: 402688
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)