Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C13
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0907 - 22490158-22490555,22490647-22491250                       30   2.8  
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081...    29   3.6  
05_06_0040 + 25116732-25118030                                         28   8.4  

>07_03_0907 - 22490158-22490555,22490647-22491250
          Length = 333

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 174 PARARYNEDMQTWQ---GRTETGSEGGEPLPP 260
           P  AR+ +   TW+   GR ++GS GGE  PP
Sbjct: 231 PPLARHLKKSDTWETRPGRRQSGSGGGEDAPP 262


>01_05_0606 -
           23607170-23607568,23607738-23607941,23608035-23608113,
           23608371-23608430,23608514-23608611,23608703-23608891,
           23610670-23611368
          Length = 575

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 231 GSEGGEPLPPANIPIDAVWQPVAGTR 308
           G  G EP PP   P +++W P+   R
Sbjct: 106 GDNGDEPRPPTVAPAESLWAPIGWRR 131


>05_06_0040 + 25116732-25118030
          Length = 432

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = +3

Query: 675 PFHYSYXPGXMALSNXSNSIVLLGAXXFYXFNXSLNXPGWGFGPXXXXETGPYXSXAFG 851
           PF Y+Y  G + L + +  IV L    F      L+ PG+ FG        P     FG
Sbjct: 129 PFSYTYGGGALVLGSLAKDIVTLHGSIF-GIAILLDVPGFCFGCVGSSIREPIGIAGFG 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,726,575
Number of Sequences: 37544
Number of extensions: 425462
Number of successful extensions: 1183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)