Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C12
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 285 4e-77
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 280 1e-75
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 4.6
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.1
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.1
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 29 6.1
06_03_0543 + 21967787-21970261 29 6.1
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 8.1
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 285 bits (698), Expect = 4e-77
Identities = 130/221 (58%), Positives = 167/221 (75%)
Frame = +1
Query: 64 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWE 243
++A G L+ E+DV MLAA HLG +N +F ME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 244 KLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 423
KL LAAR +V IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 424 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 603
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 604 LLAREVLRLRGVLPRDQRWDVVVDLFFYRXPEQSEKDEQQA 726
LLAR VL++RG + +WDV+VDLFFYR PE++++ E++A
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEA 221
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 280 bits (686), Expect = 1e-75
Identities = 126/209 (60%), Positives = 160/209 (76%)
Frame = +1
Query: 97 LALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVX 276
L+ E+D+ MLAA HLG +N +F ME YVYKRR DG ++INL +TWEKL LAAR +V
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 277 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 456
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 457 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 636
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 637 VLPRDQRWDVVVDLFFYRXPEQSEKDEQQ 723
+ +WDV+VDLFFYR PE++++ E++
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 117 CHQNACCNHPSWGRKC*LPXGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXHREPR*C 296
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 297 VRHLITALRSACCTEVCR 350
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 164 TFSAPRWVVAASILVTSSSLRASTSNP 84
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 342 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 449
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 602 GCWHVKC*GFVVCFPVTSAGMLWLICSSTVXLNKVKRMN 718
GC ++ C GFV+ TS GM ++ + ++ LN K +N
Sbjct: 359 GCMNMLCPGFVLLSRTTSPGM--VLTTGSIPLNMTKVIN 395
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 592 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 681
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 16 VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFXMETY 186
V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,917,733
Number of Sequences: 37544
Number of extensions: 564265
Number of successful extensions: 1440
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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