Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C11
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 253 1e-67
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 250 1e-66
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 31 1.5
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.2
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 29 6.2
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.2
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 8.2
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 253 bits (620), Expect = 1e-67
Identities = 119/195 (61%), Positives = 148/195 (75%), Gaps = 1/195 (0%)
Frame = +3
Query: 54 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 233
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 234 KLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 413
KL LAAR +V IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 414 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 593
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 594 LLAREVLRLRG-VLP 635
LLAR VL++RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +1
Query: 646 RWDVVVDLFFYRXPEXSEKDEQQA 717
+WDV+VDLFFYR PE +++ E++A
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEA 221
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 250 bits (612), Expect = 1e-66
Identities = 116/184 (63%), Positives = 142/184 (77%), Gaps = 1/184 (0%)
Frame = +3
Query: 87 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVX 266
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +V
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 267 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 446
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 447 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 626
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 627 -VLP 635
+LP
Sbjct: 192 TILP 195
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +1
Query: 646 RWDVVVDLFFYRXPEXSEKDEQQAKEXAVV 735
+WDV+VDLFFYR PE E EQ+ +E A+V
Sbjct: 198 KWDVMVDLFFYRDPE--EAKEQEEEEAALV 225
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 671 NKSTTTSQRWSXGKHTTKPQHFTCQQPPHQTNRVGRLGVAW 549
N S+T+S WS K T KP FT P + + + AW
Sbjct: 321 NSSSTSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAAW 361
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 154 TFSAPRWVVAASILVTSSSLRASTSNP 74
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 724 VPWLVV-HPFHFXQXHGRRTNQPQHPSAGXRGSTPRSLSTSRANNHHIKPIEWEDLVLH 551
VPW+++ PF + H +R Q+ + L + + HH + E+ ++ +H
Sbjct: 612 VPWMLIPKPFFLKKQHEQRHQGQQYTMLQATDESVTELEEHQDDPHHHEEFEFSEVFVH 670
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 332 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 439
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 161 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXH 268
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 107 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXHREPR*C 286
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 287 VRHLITALRSACCTEVCR 340
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,446,881
Number of Sequences: 37544
Number of extensions: 586586
Number of successful extensions: 1497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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