Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C10
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 176 4e-45
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 39 7e-04
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 29 1.1
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 3.2
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 27 3.2
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 5.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 7.5
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 7.5
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 176 bits (428), Expect = 4e-45
Identities = 83/167 (49%), Positives = 115/167 (68%)
Frame = +3
Query: 159 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDXLHKDIYQEI 338
QT PPT+ ++++F + +P G++ D+ AE RT T EEKRALD + D Y ++
Sbjct: 65 QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117
Query: 339 RHAAEAHRQTRKHIRNWIKPXMTMIXICEELEXTAXRLIGEDGLKAGLAFPTGCSRNHCA 518
R AAE HRQ R++ ++ IKP M+M+ + +E T L+ EDGLK+G+ FPTG S NHCA
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSLNHCA 177
Query: 519 AHYTPNTGDTTVLEYDDVXXIDFGTHINGRIIDCAFTLHFNPRYDPL 659
AHYTPN GDTT+L+ DV +D G H+NGRI+D AFT+ F+P+YD L
Sbjct: 178 AHYTPNAGDTTILKEKDVMKVDIGVHVNGRIVDSAFTMSFDPQYDNL 224
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 695 LRRQGVDVXLCXVGAAVQXVMXSHEXELXXQMYXXKPIRNLNGH 826
+ G+D L +G A+Q VM S+E E+ + + K IRNL GH
Sbjct: 236 IEEAGIDARLNEIGEAIQEVMESYEVEINGKTHQVKSIRNLCGH 279
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 39.1 bits (87), Expect = 7e-04
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Frame = +3
Query: 282 TSEEKRALDXLHKDIYQEIRHAAEAHRQTRKHIRNWIKPXMTMIXIC---EELEXTAXRL 452
TSE + + + + A E + K + +P + IC +EL A +
Sbjct: 7 TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66
Query: 453 I--GEDGLKAGLAFPTGCSRNHCAAHYTPNTGD---TTVLEYDDVXXIDFGTHING 605
+ +D K G+AFPT S N AAH +P D L+ DV I G HI+G
Sbjct: 67 VYRTKDAYK-GIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDG 121
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = +3
Query: 477 GLAFPTGCSRNHCAAHYTP-------NTGDTTVLEYDDVXXIDFGTHINGRIIDCAFTLH 635
G+A PT N+CA +Y P ++ L+ DV I G H +G + T+
Sbjct: 72 GIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIV 131
Query: 636 FNPRYDP 656
P P
Sbjct: 132 VTPPPQP 138
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 404 HXRLDPIADVFSCLPVGFSSMS 339
H LD I DVFSC PV + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 9 VKLAKESPTEVTATTEKLXALSL 77
+KL ++PT V +TTE+L LSL
Sbjct: 521 MKLKSQNPTTVHSTTERLKKLSL 543
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 459 EDGLKAGLAFPTGCSR--NHCAAHYTPNTGDTTVLEYDDVXXIDFGTHINGRIIDCAFTL 632
++ L GL+F T S N HY+P + +++ + D G D T
Sbjct: 354 KNNLFMGLSFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLCDSGAQYKDGTTDVTRTW 413
Query: 633 HF 638
HF
Sbjct: 414 HF 415
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 457 VKMGSKQVWLSPQDAAATTVQRII 528
V G + L PQD A TT++RI+
Sbjct: 1241 VHSGDATLVLPPQDLAPTTIERIV 1264
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +1
Query: 166 SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVRRKELLIXYIKIFIRKS 339
SHL +YFL++ F+RV ++L + ++ VL K L + Y++ +
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345
Query: 340 DMLLKPTGRQENTSAIGSSL 399
+ TG + IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,524
Number of Sequences: 5004
Number of extensions: 45475
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -