Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_C10
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 203 2e-52
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 200 1e-51
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 31 0.84
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 29 3.4
12_02_0604 + 20920609-20922144 29 5.9
03_01_0040 - 353861-353981,354618-354730,355034-355129,355406-35... 28 7.8
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 203 bits (495), Expect = 2e-52
Identities = 96/169 (56%), Positives = 122/169 (72%)
Frame = +3
Query: 159 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDXLHKDIYQEI 338
QT PP+IP+ ELFP G+FPEG+I + D+ R TSEEKR L+ L K +Y +
Sbjct: 191 QTDPPSIPIDELFPSGDFPEGEIQQYK-----DDNLW--RTTSEEKRELERLQKPMYNAV 243
Query: 339 RHAAEAHRQTRKHIRNWIKPXMTMIXICEELEXTAXRLIGEDGLKAGLAFPTGCSRNHCA 518
R AAE HRQ RKH+R+ +KP M MI +CE LE +LI E+GL+AG+AFPTGCS N A
Sbjct: 244 RRAAEVHRQVRKHMRSILKPGMLMIDLCETLENMVRKLIKENGLQAGIAFPTGCSLNWVA 303
Query: 519 AHYTPNTGDTTVLEYDDVXXIDFGTHINGRIIDCAFTLHFNPRYDPLXE 665
AH+TPN+GD TVL+YDDV +DFGTHI+G I+DCAFT+ FNP +D L +
Sbjct: 304 AHWTPNSGDKTVLQYDDVMKLDFGTHIDGYIVDCAFTVAFNPMFDSLLQ 352
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 695 LRRQGVDVXLCXVGAAVQXVMXSHEXELXXQMYXXKPIRNLNGH 826
++ G+D LC VGAA+Q VM S+E E+ +++ K +RNLNGH
Sbjct: 362 VKEAGIDARLCDVGAAIQEVMESYEVEINGKVFQIKSVRNLNGH 405
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 200 bits (487), Expect = 1e-51
Identities = 97/169 (57%), Positives = 120/169 (71%)
Frame = +3
Query: 159 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDXLHKDIYQEI 338
QT PP+IPV ELFP G FPEG+I + D+ R TSEEKR L+ L K +Y +
Sbjct: 135 QTDPPSIPVDELFPSGEFPEGEIQHYK-----DDNLW--RTTSEEKRELERLQKPMYNAV 187
Query: 339 RHAAEAHRQTRKHIRNWIKPXMTMIXICEELEXTAXRLIGEDGLKAGLAFPTGCSRNHCA 518
R AAE HRQ RK++R+ +KP M MI +CE LE +LI E+GL+AG+AFPTGCS N A
Sbjct: 188 RRAAEVHRQVRKYMRSILKPGMLMIDLCETLENMVRKLIKENGLEAGIAFPTGCSLNCVA 247
Query: 519 AHYTPNTGDTTVLEYDDVXXIDFGTHINGRIIDCAFTLHFNPRYDPLXE 665
AH+TPN GD TVL+YDDV +DFGTHING I+D AFT+ FNP +DPL +
Sbjct: 248 AHWTPNGGDKTVLQYDDVMKLDFGTHINGYIVDSAFTVAFNPMFDPLLQ 296
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2
Query: 695 LRRQGVDVXLCXVGAAVQXVMXSHEXELXXQMYXXKPIRNLNGH 826
++ G+D LC VGAA+Q VM S+E E+ +++ K +RNLNGH
Sbjct: 306 VKEAGIDARLCDVGAAIQEVMESYEVEINGKVFQVKSVRNLNGH 349
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 477 GLAFPTGCS--RNHCAAHYTPNTGDTTVLEYDDVXXIDFGTHINGRIIDCAFTLHF 638
GL+FPT S N HY+P L+ D + D G D T+HF
Sbjct: 456 GLSFPTISSVGPNAAVIHYSPEASSCAELDADKIYLCDSGAQYLDGTTDITRTVHF 511
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 217 RVKLWTMVLLRVLMRELQKIV-LQVRRKELLIXYIKIFIRKSDMLLK 354
+V+ + + LL +M+ + V L+V + +L +KI +K+DML++
Sbjct: 69 KVQFYALTLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKNDMLVR 115
>12_02_0604 + 20920609-20922144
Length = 511
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 288 EEKRALDXLHKDIYQEIRHAAEAHRQTRKHIRNWI 392
E++ +D L KDI Q AEAHR+ + I W+
Sbjct: 457 EKREKIDVLIKDIEQLNLEVAEAHRKRKGGIWAWL 491
>03_01_0040 -
353861-353981,354618-354730,355034-355129,355406-355522,
356071-356169,356416-356547,356651-356827,356949-357123,
357225-357313,357981-358079
Length = 405
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 183 VAELFPDGNFPEGQIMDHGPAE 248
+A+ PDGNF +G+++ GP E
Sbjct: 88 IAKCGPDGNFSKGEMVPFGPIE 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,239,905
Number of Sequences: 37544
Number of extensions: 305374
Number of successful extensions: 674
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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