Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_C10
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...   222   3e-58
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    47   1e-05
Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   5.3  
Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    28   9.3  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    28   9.3  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    28   9.3  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    28   9.3  

>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score =  222 bits (542), Expect = 3e-58
 Identities = 99/164 (60%), Positives = 127/164 (77%), Gaps = 2/164 (1%)
 Frame = +3

Query: 180 PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDXLHKDIYQEIRHAAE 353
           P+ E FPDG FP G  +D  P   +G D R A +R ++EEK+ALD  +++++Q+ R +AE
Sbjct: 81  PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138

Query: 354 AHRQTRKHIRNWIKPXMTMIXICEELEXTAXRLIGEDGLKAGLAFPTGCSRNHCAAHYTP 533
           AHRQ RK++++WIKP MTMI ICE LE T+ RLI E GL+AGLAFPTGCS NHCAAHYTP
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198

Query: 534 NTGDTTVLEYDDVXXIDFGTHINGRIIDCAFTLHFNPRYDPLXE 665
           N GDTTVL+Y DV  ID+G H+ GR+ID AFT+HF+P++DPL E
Sbjct: 199 NAGDTTVLQYGDVCKIDYGIHVRGRLIDSAFTVHFDPKFDPLVE 242



 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +2

Query: 695 LRRQGVDVXLCXVGAAVQXVMXSHEXELXXQMYXXKPIRNLNGH 826
           ++  G+DV LC VG  V+ VM SHE EL  + Y  KPIRNLNGH
Sbjct: 252 IKESGIDVRLCDVGEIVEEVMTSHEVELDGKSYVVKPIRNLNGH 295


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 429 LEXTAXRLIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGDT-TVLEYDDVXXIDFGTHING 605
           LE T      E     G+A PT  S ++C  HYTP   +   VL+   V  +D GTHI+G
Sbjct: 68  LEKTGKLYKKEKNFTKGIAMPTCISIDNCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDG 127

Query: 606 RIIDCAFTL 632
            I   A T+
Sbjct: 128 LIATAAHTV 136


>Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical
           protein ZK1128.5 protein.
          Length = 446

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 174 TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDXLHKDIYQEIRHAA 350
           ++P+ EL  +G   +   M H P  G + R A K +F+S  K  +  L KDIY    H  
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186

Query: 351 EAHR 362
           E HR
Sbjct: 187 EWHR 190


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 623  GAVNNATIYVSTKVDXXYIIIFENCCITCVRSIMRCTVVAAASCGESQTCFEP 465
            GA+ NATIY    V   Y +   N C T    +  C       C  +  C +P
Sbjct: 1627 GALTNATIYTCDPVSTCYQLGMNNNCTTIENGLSGC-------CCSTDACLDP 1672


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -3

Query: 623  GAVNNATIYVSTKVDXXYIIIFENCCITCVRSIMRCTVVAAASCGESQTCFEP 465
            GA+ NATIY    V   Y +   N C T    +  C       C  +  C +P
Sbjct: 1627 GALTNATIYTCDPVSTCYQLGMNNNCTTIENGLSGC-------CCSTDACLDP 1672


>Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical
           protein F20D1.6 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 614 NNATIYVSTKVDXXYIIIFENCCITCVRSIMRCTVVAA 501
           N A I+  TK+    + IF N  +  VR  M+ TV AA
Sbjct: 689 NQARIFNDTKIAEEILEIFNNATLDQVREWMKPTVFAA 726


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -2

Query: 333 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 193
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 16  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -2

Query: 333 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 193
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 13  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -2

Query: 333 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 193
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 22  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -2

Query: 333 PDKYLYVXYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 193
           P+ Y  +  Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 15  PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,567
Number of Sequences: 27780
Number of extensions: 263692
Number of successful extensions: 685
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)